# This E. coli expression dataset was provided courtesy of # Prof. Tyrell Conway from the University of Oklahoma, and # is described in Tao et al, 1999, J. Bact., 181:645. # # Users will typically want to display the ratio of the 12 and 13th # columns, i.e. since the first column is numbered column zero, display the # ratios of columns number 11 and 12. # # Columns of this dataset are: # GlcVol1a GlcVolb ratioa/b loga/b GlcLBa Vol GlcLBb Vol ratioa/b loga/b MinGlc Avg Vol GlcLB Avg Vol Min Glc Pct Glc LB Pct Array Pos F2 Field Spot Glc Min/LB Ratio Log Ratio GeneM53 b# M53product Functional Group M53 function # # b0001 2967 3166 -1.07 -0.028 1364 1253 1.09 0.037 3066 1309 0.018094 0.007880 E7 4 2 1851 2.30 0.361 thrL b0001 thr operon leader peptide Amino acid biosynthesis leader; Amino acid biosynthesis: Threonine b0002 3161 5195 -1.64 -0.216 2066 2066 1.00 0.000 4178 2066 0.024651 0.012439 G7 4 2 1852 1.98 0.297 thrA b0002 "aspartokinase I, homoserine dehydrogenase I" Amino acid biosynthesis enzyme; Amino acid biosynthesis: Threonine b0003 12621 15198 -1.20 -0.081 11863 11826 1.00 0.001 13909 11845 0.082076 0.071311 I7 4 2 1853 1.15 0.061 thrB b0003 homoserine kinase Amino acid biosynthesis enzyme; Amino acid biosynthesis: Threonine b0004 7517 9300 -1.24 -0.092 4800 4821 -1.00 -0.002 8408 4811 0.049615 0.028963 K7 4 2 1854 1.71 0.234 thrC b0004 threonine synthase Amino acid biosynthesis enzyme; Amino acid biosynthesis: Threonine b0005 3982 4287 -1.08 -0.032 1903 2141 -1.12 -0.051 4135 2022 0.024397 0.012175 P15 4 2 2656 2.00 0.302 b0005 b0005 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0006 315 528 -1.06 -0.024 482 428 1.00 0.000 421 455 0.002487 0.002740 B17 4 2 2657 -1.00 0.000 yaaA b0006 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0007 2165 1788 1.21 0.083 641 781 -1.22 -0.086 1976 711 0.011662 0.004282 O14 3 1 632 2.72 0.435 yaaJ b0007 inner membrane transport protein Putative transport proteins "putative transport; Transport of small molecules: Amino acids, amines" b0008 3363 5705 -1.70 -0.230 4938 5513 -1.12 -0.048 4534 5226 0.026753 0.031462 P2 2 1 1256 -1.18 -0.070 talB b0008 transaldolase B Central intermediary metabolism "enzyme; Central intermediary metabolism: Non-oxidative branch, pentose pathway" b0009 7400 5193 1.42 0.154 5886 5371 1.10 0.040 6297 5629 0.037154 0.033887 G18 4 2 2276 1.10 0.040 mog b0009 required for the efficient incorporation of molybdate into molybdoproteins "Biosynthesis of cofactors, prosthetic groups and carriers" "transport; Biosynthesis of cofactors, carriers: Molybdopterin" b0010 1858 1177 1.58 0.198 1310 1564 -1.19 -0.077 1517 1437 0.008952 0.008649 D17 4 2 2658 1.04 0.015 yaaH b0010 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0011 2317 2181 1.06 0.026 1482 1394 1.06 0.027 2249 1438 0.013272 0.008658 F19 1 2 2379 1.53 0.186 b0011 b0011 putative oxidoreductase Putative enzymes putative enzyme; Not classified b0012 1501 1374 1.09 0.039 1044 1007 1.04 0.016 1438 1026 0.008484 0.006175 F1 4 1 1059 1.37 0.138 htgA b0012 positive regulator for sigma 32 heat shock promoters Regulatory function "regulator; Adaptations, atypical conditions" b0013 1902 1844 1.03 0.013 573 1042 -1.82 -0.260 1873 807 0.011053 0.004859 F17 4 2 2659 2.27 0.357 yaaI b0013 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0014 11956 14178 -1.19 -0.074 17228 15065 1.14 0.058 13067 16147 0.077106 0.097211 H1 4 1 1060 -1.26 -0.101 dnaK b0014 chaperone Hsp70; DNA biosynthesis; autoregulated heat shock proteins Cell processes factor; Chaperones b0015 3059 3625 -1.19 -0.074 3363 3614 -1.07 -0.031 3342 3488 0.019719 0.021002 J1 4 1 1061 -1.07 -0.027 dnaJ b0015 chaperone with DnaK; heat shock protein Cell processes factor; Chaperones b0016 5779 4737 1.22 0.086 4531 4226 1.07 0.030 5258 4378 0.031027 0.026360 G5 4 1 308 1.18 0.071 yi81_1 b0016 IS186 hypothetical protein "Phage, transposon, or plasmid" "IS, phage, Tn; Transposon-related functions" b0017 3171 3726 -1.18 -0.070 1961 1950 1.01 0.002 3449 1955 0.020349 0.011772 H17 4 2 2660 1.73 0.238 yi82_1 b0017 IS186 & IS421 hypothetical protein "Phage, transposon, or plasmid" "IS, phage, Tn; Transposon-related functions" b0018 3549 3682 -1.04 -0.016 2189 2365 -1.08 -0.034 3616 2277 0.021334 0.013710 L1 4 1 1062 1.56 0.192 gef b0018 Gef protein interferes with membrane function when in excess Cell processes membrane; Cell killing b0019 2520 2614 -1.04 -0.016 1260 1072 1.17 0.070 2567 1166 0.015146 0.007019 A16 3 1 633 2.16 0.334 nhaA b0019 "Na+/H antiporter, pH dependent" Transport and binding proteins transport; Transport of small molecules: Cations b0020 1035 1114 -1.08 -0.032 664 753 -1.13 -0.054 1075 708 0.006342 0.004265 C16 3 1 634 1.49 0.172 nhaR b0020 transcriptional activator of nhaA Regulatory function regulator; Transport of small molecules: Cations b0021 655 615 1.07 0.028 738 673 1.10 0.040 635 705 0.003747 0.004247 I5 4 1 309 -1.13 -0.054 insB_1 b0021 IS1 protein InsB "Phage, transposon, or plasmid" "IS, phage, Tn; Transposon-related functions" b0022 13277 12605 1.05 0.023 7910 7879 1.00 0.002 12941 7895 0.076363 0.047530 K5 4 1 310 1.61 0.206 insA_1 b0022 IS1 protein InsA "Phage, transposon, or plasmid" "IS, phage, Tn; Transposon-related functions" b0023 7269 6930 1.05 0.021 26118 27613 -1.06 -0.024 7099 26865 0.041891 0.161743 I9 2 2 1669 -3.86 -0.587 rpsT b0023 30S ribosomal subunit protein S20 "Translation, post-translational modification" "structural component; Ribosomal proteins - synthesis, modification" b0024 832 1550 -1.86 -0.270 897 1026 -1.14 -0.058 1191 962 0.007027 0.005790 J17 4 2 2661 1.21 0.084 b0024 b0024 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0025 624 969 -1.55 -0.191 437 703 -1.41 -0.148 797 570 0.004701 0.003432 M19 2 1 175 1.37 0.137 ribF b0025 putative regulator Putative regulatory proteins putative regulator; Not classified b0026 7795 9019 -1.16 -0.063 20992 21803 -1.04 -0.016 8407 21397 0.049606 0.128823 K9 2 2 1670 -2.60 -0.414 ileS b0026 isoleucine tRNA synthetase "Translation, post-translational modification" "enzyme; Aminoacyl tRNA synthetases, tRNA modification" b0027 719 5 1.44 0.158 629 306 1.26 0.100 362 467 0.002136 0.002814 E16 3 1 635 -1.00 0.000 lspA b0027 prolipoprotein signal peptidase (SPase II) Cell processes "enzyme; Protein, peptide secretion" b0028 2642 2459 1.07 0.031 2156 2154 1.00 0.000 2551 2155 0.015051 0.012972 L17 4 2 2662 1.16 0.065 slpA b0028 probable FKBX-type 16KD peptidyl-prolyl cis-trans isomerase (a rotamase) Putative factors putative enzyme; Proteins - translation and modification b0029 271 657 -1.31 -0.119 428 722 -1.44 -0.160 464 575 0.002740 0.003460 C9 2 1 130 -1.15 -0.062 lytB b0029 control of stringent response; involved in penicillin tolerance Regulatory function regulator; Global regulatory functions b0030 1614 1670 -1.03 -0.015 3584 3592 -1.00 -0.001 1642 3588 0.009689 0.021600 N17 4 2 2663 -2.23 -0.348 yaaF b0030 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0031 2690 2752 -1.02 -0.010 2138 2401 -1.12 -0.050 2721 2269 0.016056 0.013661 M7 4 2 1855 1.18 0.070 dapB b0031 dihydrodipicolinate reductase Amino acid biosynthesis enzyme; Amino acid biosynthesis: Lysine b0032 1681 1257 1.34 0.126 2254 2285 -1.01 -0.006 1469 2270 0.008668 0.013666 K16 1 2 1982 -1.58 -0.198 carA b0032 "carbamoyl-phosphate synthetase, glutamine (small) subunit" Nucleotide biosynthesis and metabolism enzyme; Pyrimidine ribonucleotide biosynthesis b0033 1714 1499 1.14 0.058 1996 1824 1.09 0.039 1607 1910 0.009481 0.011500 M16 1 2 1983 -1.21 -0.084 carB b0033 carbamoyl-phosphate synthase large subunit Nucleotide biosynthesis and metabolism enzyme; Pyrimidine ribonucleotide biosynthesis b0034 375 678 -1.36 -0.132 296 359 -1.00 0.000 527 328 0.003108 0.001974 N1 4 1 1063 1.04 0.015 caiF b0034 transcriptional regulator of cai operon Regulatory function "regulator; Central intermediary metabolism: Pool, multipurpose conversions" b0035 19772 17619 1.12 0.050 15167 17921 -1.18 -0.072 18696 16544 0.110318 0.099605 H4 2 3 1064 1.11 0.044 caiE b0035 possible synthesis of cofactor for carnitine racemase and dehydratase Putative enzymes "putative enzyme; Central intermediary metabolism: Pool, multipurpose conversions" b0036 11160 11535 -1.03 -0.014 7161 7313 -1.02 -0.009 11348 7237 0.066958 0.043569 B3 4 1 1065 1.54 0.187 caiD b0036 carnitine racemase Central intermediary metabolism enzyme; Degradation of small molecules: Amines b0037 1223 1160 1.05 0.023 592 599 -1.01 -0.005 1192 595 0.007032 0.003583 D3 4 1 1066 1.96 0.293 caiC b0037 probable crotonobetaine/carnitine-CoA ligase Putative enzymes "putative enzyme; Central intermediary metabolism: Pool, multipurpose conversions" b0038 4947 5756 -1.16 -0.066 3415 3613 -1.06 -0.024 5351 3514 0.031575 0.021156 F3 4 1 1067 1.49 0.174 caiB b0038 l-carnitine dehydratase Central intermediary metabolism "enzyme; Central intermediary metabolism: Pool, multipurpose conversions" b0039 1423 1588 -1.12 -0.048 1121 1202 -1.07 -0.031 1506 1162 0.008884 0.006993 H3 4 1 1068 1.27 0.104 caiA b0039 probable carnitine operon oxidoreductase Putative enzymes "putative regulator; Central intermediary metabolism: Pool, multipurpose conversions" b0040 4123 4193 -1.02 -0.007 2154 2173 -1.01 -0.004 4158 2163 0.024536 0.013025 J3 4 1 1069 1.88 0.275 caiT b0040 probable carnitine transporter Putative transport proteins "putative transport; Central intermediary metabolism: Pool, multipurpose conversions" b0041 4403 4944 -1.12 -0.050 2733 3480 -1.27 -0.105 4673 3106 0.027577 0.018703 B4 2 1 1257 1.47 0.169 fixA b0041 "probable flavoprotein subunit, carnitine metabolism" Putative enzymes "putative enzyme; Energy metabolism, carbon: Electron transport" b0042 371 733 -1.47 -0.166 152 660 -1.32 -0.120 552 406 0.003256 0.002443 D4 2 1 1258 1.09 0.036 fixB b0042 "probable flavoprotein subunit, carnitine metabolism" Putative enzymes "putative enzyme; Energy metabolism, carbon: Electron transport" b0043 1182 1038 1.14 0.056 420 525 -1.05 -0.021 1110 472 0.006550 0.002844 P17 4 2 2664 2.18 0.339 fixC b0043 flavoprotein; electron transport Putative enzymes "putative carrier; Energy metabolism, carbon: Electron transport" b0044 211 465 -1.00 0.000 639 751 -1.18 -0.070 338 695 0.001993 0.004186 F4 2 1 1259 -1.40 -0.145 fixX b0044 putative ferredoxin Putative enzymes putative carrier; Not classified b0045 33037 30532 1.08 0.034 13348 11807 1.13 0.053 31785 12578 0.187551 0.075725 G16 3 1 636 2.48 0.394 yaaU b0045 putative transport protein Putative transport proteins putative transport; Not classified b0046 7744 7399 1.05 0.020 3189 3516 -1.10 -0.043 7572 3353 0.044679 0.020184 H19 1 2 2380 2.21 0.345 yabF b0046 putative NAD(P)H oxidoreductase Putative enzymes putative enzyme; Not classified b0047 3167 2473 1.28 0.107 1446 1178 1.23 0.089 2820 1312 0.016641 0.007896 I16 3 1 637 2.11 0.324 kefC b0047 "K+ efflux antiporter, glutathione-regulated" Transport and binding proteins transport; Transport of small molecules: Cations b0048 2632 2534 1.04 0.016 1716 1982 -1.15 -0.062 2583 1849 0.015240 0.011132 I18 4 2 2277 1.37 0.136 folA b0048 dihydrofolate reductase type I; trimethoprim resistance "Biosynthesis of cofactors, prosthetic groups and carriers" "enzyme; Biosynthesis of cofactors, carriers: Folic acid" b0049 3211 2843 1.13 0.053 2760 3381 -1.22 -0.088 3027 3070 0.017863 0.018486 O16 1 2 1984 -1.03 -0.015 apaH b0049 diadenosine tetraphosphatase Nucleotide biosynthesis and metabolism enzyme; Salvage of nucleosides and nucleotides b0050 1061 1022 1.04 0.016 873 905 -1.04 -0.016 1042 889 0.006146 0.005354 B19 4 2 2665 1.15 0.060 apaG b0050 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0051 1220 1420 -1.16 -0.066 1391 1611 -1.16 -0.064 1320 1501 0.007791 0.009038 L3 4 1 1070 -1.16 -0.064 ksgA b0051 "S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase" Cell processes enzyme; Drug/analog sensitivity b0052 4134 4008 1.03 0.013 2358 2563 -1.09 -0.036 4071 2460 0.024021 0.014813 K18 4 2 2278 1.62 0.210 pdxA b0052 pyridoxine biosynthesis "Biosynthesis of cofactors, prosthetic groups and carriers" "enzyme; Biosynthesis of cofactors, carriers: Pyridoxine" b0053 2610 3177 -1.22 -0.085 2721 2898 -1.07 -0.027 2893 2810 0.017073 0.016916 L9 4 2 2630 1.01 0.004 surA b0053 survival protein Cell processes phenotype; Not classified b0054 1522 1450 1.05 0.021 1122 1020 1.10 0.042 1486 1071 0.008768 0.006449 N3 4 1 1071 1.36 0.133 imp b0054 organic solvent tolerance Cell processes "phenotype; Adaptations, atypical conditions" b0055 606 804 -1.32 -0.122 576 454 1.15 0.062 705 515 0.004160 0.003103 D19 4 2 2666 1.34 0.127 yabH b0055 putative DNA binding protein "Hypothetical, unclassified, unknown" phenotype; Not classified b0056 5414 5889 -1.09 -0.037 2685 2979 -1.11 -0.045 5651 2832 0.033347 0.017050 F19 4 2 2667 1.96 0.291 yabP b0056 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0057 5703 4767 1.20 0.078 2652 2973 -1.12 -0.050 5235 2813 0.030892 0.016933 H19 4 2 2668 1.82 0.261 yabQ b0057 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0058 4684 4943 -1.06 -0.023 2625 2581 1.02 0.007 4813 2603 0.028403 0.015671 J19 4 2 2669 1.81 0.258 yabO b0058 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0059 1025 844 1.21 0.084 1619 1440 1.12 0.051 934 1530 0.005513 0.009210 K19 1 2 1614 -1.67 -0.223 hepA b0059 probable ATP-dependent RNA helicase Putative enzymes "putative enzyme; RNA synthesis, modification, DNA transcription" b0060 5738 5404 1.06 0.026 3953 4089 -1.03 -0.015 5571 4021 0.032872 0.024209 F16 4 1 1499 1.36 0.133 polB b0060 DNA polymerase II "DNA replication, repair, restriction/modification" "enzyme; DNA - replication, repair, restriction/modification" b0061 12111 11803 1.03 0.011 9141 8929 1.02 0.010 11957 9035 0.070556 0.054397 B2 2 3 1 1.30 0.113 araD b0061 L-ribulose-5-phosphate 4-epimerase Carbon compound catabolism enzyme; Degradation of small molecules: Carbon compounds b0062 643 627 1.03 0.011 999 1067 -1.07 -0.028 635 1033 0.003748 0.006219 C1 1 1 2 -1.66 -0.220 araA b0062 L-arabinose isomerase Carbon compound catabolism enzyme; Degradation of small molecules: Carbon compounds b0063 2757 2935 -1.06 -0.027 1741 1895 -1.09 -0.037 2846 1818 0.016793 0.010945 E1 1 1 3 1.53 0.186 araB b0063 L-ribulokinase Carbon compound catabolism enzyme; Degradation of small molecules: Carbon compounds b0064 737 755 -1.02 -0.011 432 396 1.00 0.000 746 414 0.004403 0.002493 G1 1 1 4 1.47 0.167 araC b0064 transcriptional regulator for ara operon Regulatory function regulator; Degradation of small molecules: Carbon compounds b0065 1205 1296 -1.08 -0.032 625 628 -1.00 -0.002 1250 627 0.007378 0.003772 L19 4 2 2670 1.96 0.291 yabI b0065 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0066 256 364 -1.00 0.000 288 298 -1.00 0.000 310 293 0.001830 0.001764 B13 2 1 913 1.00 0.000 yabJ b0066 putative ATP-binding component of a transport system Putative transport proteins putative transport; Not classified b0067 10388 10236 1.01 0.006 8527 10006 -1.17 -0.069 10312 9267 0.060851 0.055791 D13 2 1 914 1.09 0.038 yabK b0067 putative transport system permease protein Putative transport proteins putative transport; Not classified b0068 2733 2403 1.14 0.056 2105 2251 -1.07 -0.029 2568 2178 0.015156 0.013113 M18 4 2 2279 1.16 0.063 tbpA b0068 thiamin-binding periplasmic protein Putative transport proteins putative transport; Transport of small molecules: Other b0069 899 955 -1.06 -0.026 989 1116 -1.13 -0.053 927 1053 0.005469 0.006337 N19 4 2 2671 -1.16 -0.064 yabN b0069 putative transport protein Putative transport proteins putative transport; Not classified b0070 2994 3206 -1.07 -0.030 6566 7044 -1.07 -0.031 3100 6805 0.018294 0.040968 F13 2 1 915 -2.24 -0.350 yabM b0070 putative transport protein Putative transport proteins putative transport; Not classified b0071 4664 4427 1.05 0.023 384 587 -1.17 -0.070 4546 485 0.026822 0.002923 O7 4 2 1856 8.94 0.951 leuD b0071 isopropylmalate isomerase subunit Amino acid biosynthesis enzyme; Amino acid biosynthesis: Leucine b0072 6423 5076 1.27 0.102 1446 1617 -1.12 -0.048 5750 1531 0.033927 0.009220 A9 4 2 1857 3.68 0.566 leuC b0072 3-isopropylmalate isomerase (dehydratase) subunit Amino acid biosynthesis enzyme; Amino acid biosynthesis: Leucine b0073 3881 3613 1.07 0.031 548 741 -1.35 -0.131 3747 644 0.022110 0.003880 C9 4 2 1858 5.70 0.756 leuB b0073 3-isopropylmalate dehydrogenase Amino acid biosynthesis enzyme; Amino acid biosynthesis: Leucine b0074 6692 6704 -1.00 -0.001 965 1074 -1.11 -0.046 6698 1020 0.039524 0.006139 E9 4 2 1859 6.44 0.809 leuA b0074 2-isopropylmalate synthase Amino acid biosynthesis enzyme; Amino acid biosynthesis: Leucine b0075 8913 7069 1.26 0.101 3353 3285 1.02 0.009 7991 3319 0.047151 0.019980 G9 4 2 1860 2.36 0.373 leuL b0075 leu operon leader peptide Amino acid biosynthesis leader; Amino acid biosynthesis: Leucine b0076 2320 2954 -1.27 -0.105 1631 1703 -1.04 -0.019 2637 1667 0.015561 0.010038 I9 4 2 1861 1.55 0.190 leuO b0076 probable transcriptional activator for leuABCD operon Putative regulatory proteins putative regulator; Amino acid biosynthesis: Leucine b0077 7143 6839 1.04 0.019 3506 3492 1.00 0.002 6991 3499 0.041253 0.021066 K9 4 2 1862 1.96 0.292 ilvI b0077 "acetolactate synthase III, valine sensitive, large subunit" Amino acid biosynthesis "enzyme; Amino acid biosynthesis: Isoleucine, Valine" b0078 3569 3673 -1.03 -0.012 2775 3169 -1.14 -0.058 3621 2972 0.021366 0.017893 M9 4 2 1863 1.19 0.077 ilvH b0078 "acetolactate synthase III, valine sensitive, small subunit" Amino acid biosynthesis "enzyme; Amino acid biosynthesis: Isoleucine, Valine" b0079 62 66 -1.00 0.000 197 -78 1.00 0.000 64 59 0.000376 0.000358 H4 2 1 1260 1.00 0.000 fruL b0079 fruR leader peptide Energy metabolism "leader; Energy metabolism, carbon: Glycolysis" b0080 675 1093 -1.62 -0.209 482 879 -1.76 -0.245 884 680 0.005215 0.004096 J4 2 1 1261 1.27 0.105 fruR b0080 transcriptional repressor of fru operon and others Regulatory function "regulator; Energy metabolism, carbon: Glycolysis" b0081 1677 1460 1.15 0.060 869 1084 -1.25 -0.096 1569 977 0.009257 0.005881 P19 4 2 2672 1.57 0.197 yabB b0081 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0082 2502 2172 1.15 0.061 1449 1602 -1.11 -0.044 2337 1525 0.013790 0.009183 K4 3 1 590 1.50 0.177 yabC b0082 putative apolipoprotein "Hypothetical, unclassified, unknown" orf; Not classified b0083 1247 1318 -1.06 -0.024 673 694 -1.03 -0.014 1283 683 0.007570 0.004114 P3 4 1 1072 1.84 0.265 ftsL b0083 cell division protein; ingrowth of wall at septum Cell processes phenotype; Cell division b0084 28069 20806 1.35 0.130 20319 20385 -1.00 -0.001 24438 20352 0.144200 0.122530 B5 4 1 1073 1.18 0.071 ftsI b0084 septum formation; penicillin-binding protein 3; peptidoglycan synthetase Cell processes enzyme; Cell division b0085 29605 27906 1.06 0.026 24496 24120 1.02 0.007 28756 24308 0.169678 0.146347 E4 1 1 395 1.16 0.064 murE b0085 meso-diaminopimelate-adding enzyme Cell structure "enzyme; Murein sacculus, peptidoglycan" b0086 3575 3606 -1.01 -0.004 3072 3153 -1.03 -0.011 3591 3112 0.021189 0.018736 G4 1 1 396 1.13 0.053 murF b0086 D-alanine:D-alanine-adding enzyme Cell structure "enzyme; Murein sacculus, peptidoglycan" b0087 5545 5697 -1.03 -0.012 6197 6009 1.03 0.013 5621 6103 0.033166 0.036741 I4 1 1 397 -1.11 -0.044 mraY b0087 phospho-N-acetylmuramoyl-pentapeptide transferase? Cell structure "enzyme; Murein sacculus, peptidoglycan" b0088 6373 7048 -1.11 -0.044 3671 3621 1.01 0.006 6711 3646 0.039598 0.021951 K4 1 1 398 1.80 0.256 murD b0088 UDP-N-acetylmuramoylalanine-D-glutamate ligase Cell structure "enzyme; Murein sacculus, peptidoglycan" b0089 2295 2139 1.07 0.031 506 1480 -2.93 -0.466 2217 993 0.013083 0.005976 D5 4 1 1074 2.19 0.340 ftsW b0089 cell division; membrane protein involved in shape determination Cell processes membrane; Cell division b0090 42802 33168 1.29 0.111 24030 24601 -1.02 -0.010 37985 24315 0.224138 0.146393 M4 1 1 399 1.53 0.185 murG b0090 UDP-N-acetylglucosamine:N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase Cell structure "enzyme; Murein sacculus, peptidoglycan" b0091 8233 7283 1.13 0.053 7393 7521 -1.02 -0.007 7758 7457 0.045777 0.044895 O4 1 1 400 1.02 0.008 murC b0091 "L-alanine adding enzyme, UDP-N-acetyl-muramate:alanine ligase" Cell structure "enzyme; Murein sacculus, peptidoglycan" b0092 9272 9240 1.00 0.001 8374 7434 1.13 0.052 9256 7904 0.054615 0.047586 A6 1 1 401 1.15 0.060 ddlB b0092 "D-alanine-D-alanine ligase B, affects cell division" Cell structure "enzyme; Murein sacculus, peptidoglycan" b0093 12747 10476 1.22 0.085 6013 6173 -1.03 -0.011 11612 6093 0.068516 0.036683 F5 4 1 1075 1.87 0.271 ftsQ b0093 cell division protein; ingrowth of wall at septum Cell processes phenotype; Cell division b0094 3597 3363 1.07 0.029 1517 1757 -1.16 -0.064 3480 1637 0.020534 0.009854 H5 4 1 1076 2.08 0.319 ftsA b0094 "ATP-binding cell division protein, septation process, complexes with FtsZ, associated with junctions of inner and outer membranes" Cell processes phenotype; Cell division b0095 3372 2466 1.37 0.136 1426 1328 1.07 0.031 2919 1377 0.017223 0.008290 J5 4 1 1077 2.08 0.318 ftsZ b0095 cell division; forms circumferential ring; tubulin-like GTP-binding protein and GTPase Cell processes enzyme; Cell division b0096 3870 3304 1.17 0.069 4007 4361 -1.09 -0.037 3587 4184 0.021165 0.025189 C6 1 1 402 -1.19 -0.076 lpxC b0096 UDP-3-O-acyl N-acetylglucosamine deacetylase; lipid A biosynthesis Cell structure enzyme; Surface polysaccharides & antigens b0097 5145 5006 1.03 0.012 5736 5935 -1.03 -0.015 5075 5836 0.029947 0.035134 B21 4 2 2673 -1.17 -0.069 yacA b0097 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0098 212 116 1.00 0.000 190 60 1.00 0.000 164 125 0.000970 0.000754 K16 3 1 638 1.00 0.000 secA b0098 preprotein translocase; secretion protein Transport and binding proteins "transport; Protein, peptide secretion" b0099 449 266 1.00 0.000 392 443 -1.00 0.000 358 417 0.002110 0.002513 A18 1 2 1985 -1.00 0.000 mutT b0099 "7,8-dihydro-8-oxoguanine-triphosphatase, prefers dGTP, causes AT-GC transversions" Nucleotide biosynthesis and metabolism enzyme; 2'-Deoxyribonucleotide metabolism b0100 10468 10870 -1.04 -0.016 7277 7826 -1.08 -0.032 10669 7551 0.062956 0.045462 D21 4 2 2674 1.38 0.141 b0100 b0100 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0101 35569 34045 1.04 0.019 26934 28140 -1.04 -0.019 34807 27537 0.205385 0.165787 F21 4 2 2675 1.24 0.093 yacG b0101 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0102 7076 7382 -1.04 -0.018 5246 5597 -1.07 -0.028 7229 5422 0.042654 0.032641 H21 4 2 2676 1.31 0.116 yacF b0102 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0103 659 864 -1.31 -0.117 315 381 -1.00 0.000 761 348 0.004493 0.002095 H16 4 1 1500 1.50 0.175 yacE b0103 putative DNA repair protein "Hypothetical, unclassified, unknown" orf; Not classified b0104 3602 3236 1.11 0.046 3259 3734 -1.15 -0.059 3419 3496 0.020175 0.021051 C18 1 2 1986 -1.04 -0.018 guaC b0104 GMP reductase Nucleotide biosynthesis and metabolism enzyme; Purine ribonucleotide biosynthesis b0105 1926 1689 1.14 0.057 1324 1336 -1.01 -0.004 1807 1330 0.010665 0.008007 J21 4 2 2677 1.33 0.124 b0105 b0105 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0106 9225 9925 -1.08 -0.032 5683 6008 -1.06 -0.024 9575 5846 0.056500 0.035194 E6 1 1 403 1.61 0.206 hofC b0106 "putative integral membrane protein involved in biogenesis of fimbriae, protein transport, DNA uptake" Putative transport proteins putative transport; Not classified b0107 12732 12984 -1.02 -0.009 8385 8589 -1.02 -0.010 12858 8487 0.075870 0.051098 G6 1 1 404 1.48 0.172 hofB b0107 "putative integral membrane protein involved in biogenesis of fimbriae, protein transport, DNA uptake" Putative transport proteins putative transport; Not classified b0108 1389 755 1.84 0.265 1047 1123 -1.07 -0.030 1072 1085 0.006327 0.006533 N9 4 2 2631 -1.03 -0.014 ppdD b0108 prelipin peptidase dependent protein Putative enzymes putative enzyme; Not classified b0109 655 762 -1.16 -0.065 1051 780 1.35 0.130 708 915 0.004180 0.005512 O18 4 2 2280 -1.32 -0.120 nadC b0109 quinolinate phosphoribosyltransferase "Biosynthesis of cofactors, prosthetic groups and carriers" "enzyme; Biosynthesis of cofactors, carriers: Pyridine nucleotide" b0110 4820 4693 1.03 0.012 2811 2689 1.05 0.019 4756 2750 0.028064 0.016557 L5 4 1 1078 1.70 0.229 ampD b0110 regulates ampC Regulatory function regulator; Not classified b0111 2064 1710 1.21 0.082 800 1225 -1.53 -0.185 1887 1013 0.011135 0.006097 N5 4 1 1079 1.83 0.262 ampE b0111 regulates ampC Regulatory function regulator; Drug/analog sensitivity b0112 3285 2603 1.26 0.101 499 1023 -2.05 -0.311 2944 761 0.017374 0.004582 M16 3 1 639 3.79 0.579 aroP b0112 aromatic amino acid transport protein Transport and binding proteins "transport; Transport of small molecules: Amino acids, amines" b0113 730 979 -1.34 -0.127 1293 1449 -1.12 -0.049 855 1371 0.005043 0.008254 L4 2 1 1262 -1.64 -0.214 pdhR b0113 transcriptional regulator for pyruvate dehydrogenase complex Regulatory function "regulator; Energy metabolism, carbon: Pyruvate dehydrogenase" b0114 6799 7576 -1.11 -0.047 14686 14595 1.01 0.003 7187 14641 0.042409 0.088146 N4 2 1 1263 -2.08 -0.318 aceE b0114 pyruvate dehydrogenase (decarboxylase component) Central intermediary metabolism "enzyme; Energy metabolism, carbon: Pyruvate dehydrogenase" b0115 4199 4389 -1.05 -0.019 6372 6392 -1.00 -0.001 4294 6382 0.025338 0.038425 P4 2 1 1264 -1.52 -0.181 aceF b0115 pyruvate dehydrogenase (dihydrolipoyltransacetylase component) Central intermediary metabolism "enzyme; Energy metabolism, carbon: Pyruvate dehydrogenase" b0116 14948 17740 -1.19 -0.074 30956 33310 -1.08 -0.032 16344 32133 0.096440 0.193460 B6 2 1 1265 -2.01 -0.302 lpdA b0116 lipoamide dehydrogenase (NADH); component of 2-oxodehydrogenase and pyruvate complexes; L-protein of glycine cleavage complex Central intermediary metabolism "enzyme; Energy metabolism, carbon: Pyruvate dehydrogenase" b0117 6516 6447 1.01 0.005 1672 1898 -1.14 -0.055 6481 1785 0.038245 0.010745 L21 4 2 2678 3.56 0.551 yacH b0117 putative membrane protein putative membrane protein putative membrane; Not classified b0118 3260 3448 -1.06 -0.024 3044 3562 -1.17 -0.068 3354 3303 0.019790 0.019887 D6 2 1 1266 -1.00 -0.002 acnB b0118 aconitate hydrase B Central intermediary metabolism "enzyme; Energy metabolism, carbon: TCA cycle" b0119 1454 1836 -1.26 -0.101 1402 1557 -1.11 -0.046 1645 1479 0.009705 0.008906 N21 4 2 2679 1.09 0.037 yacL b0119 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0120 53644 45181 1.19 0.075 25026 23946 1.05 0.019 49413 24486 0.291570 0.147419 O18 2 2 2088 1.98 0.296 speD b0120 S-adenosylmethionine decarboxylase Central intermediary metabolism enzyme; Central intermediary metabolism: Polyamine biosynthesis b0121 618 1100 -1.78 -0.250 2593 3131 -1.21 -0.082 859 2862 0.005070 0.017232 A20 2 2 2089 -3.40 -0.531 speE b0121 spermidine synthase = putrescine aminopropyltransferase Central intermediary metabolism enzyme; Central intermediary metabolism: Polyamine biosynthesis b0122 188 239 -1.00 0.000 276 380 -1.00 0.000 213 328 0.001259 0.001975 H13 2 1 916 -1.00 0.000 yacC b0122 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0123 610 423 1.22 0.086 875 963 -1.10 -0.042 516 919 0.003047 0.005533 P21 4 2 2680 -1.82 -0.259 yacK b0123 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0124 5331 5494 -1.03 -0.013 4234 4581 -1.08 -0.034 5413 4407 0.031940 0.026535 I1 1 1 5 1.20 0.081 gcd b0124 glucose dehydrogenase Carbon compound catabolism enzyme; Degradation of small molecules: Carbon compounds b0125 2444 2361 1.04 0.015 2305 2703 -1.17 -0.069 2402 2504 0.014174 0.015076 E18 1 2 1987 -1.06 -0.027 hpt b0125 hypoxanthine phosphoribosyltransferase Nucleotide biosynthesis and metabolism enzyme; Salvage of nucleosides and nucleotides b0126 17290 13616 1.27 0.104 8608 8808 -1.02 -0.010 15453 8708 0.091184 0.052425 J19 1 2 2381 1.74 0.240 yadF b0126 putative carbonic anhdrase (EC 4.2.1.1) Putative enzymes putative enzyme; Not classified b0127 2363 2881 -1.22 -0.086 515 797 -1.55 -0.190 2622 656 0.015472 0.003950 J13 2 1 917 3.92 0.593 yadG b0127 putative ATP-binding component of a transport system Putative transport proteins putative transport; Not classified b0128 2279 1740 1.31 0.117 3112 2987 1.04 0.018 2009 3050 0.011856 0.018360 B23 4 2 2681 -1.55 -0.190 yadH b0128 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0129 2050 2032 1.01 0.004 1649 1478 1.12 0.048 2041 1563 0.012042 0.009412 L19 1 2 2382 1.28 0.107 yadI b0129 putative PTS enzyme II B component Putative transport proteins putative transport; Not classified b0130 2419 2576 -1.06 -0.027 2273 2354 -1.04 -0.015 2498 2314 0.014738 0.013929 D23 4 2 2682 1.06 0.025 yadE b0130 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0131 718 899 -1.25 -0.097 1530 1385 1.10 0.043 808 1458 0.004771 0.008775 A20 4 2 2281 -1.84 -0.265 panD b0131 aspartate 1-decarboxylase "Biosynthesis of cofactors, prosthetic groups and carriers" "enzyme; Biosynthesis of cofactors, carriers: Pantothenate" b0132 990 1074 -1.09 -0.035 1035 808 1.28 0.107 1032 922 0.006091 0.005548 F23 4 2 2683 1.10 0.041 yadD b0132 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0133 1373 1536 -1.12 -0.049 1409 1598 -1.13 -0.055 1455 1503 0.008583 0.009052 C20 4 2 2282 -1.05 -0.023 panC b0133 pantothenate synthetase "Biosynthesis of cofactors, prosthetic groups and carriers" "enzyme; Biosynthesis of cofactors, carriers: Pantothenate" b0134 8450 8210 1.03 0.013 8223 8978 -1.09 -0.038 8330 8600 0.049153 0.051778 E20 4 2 2283 -1.05 -0.023 panB b0134 3-methyl-2-oxobutanoate hydroxymethyltransferase "Biosynthesis of cofactors, prosthetic groups and carriers" "enzyme; Biosynthesis of cofactors, carriers: Pantothenate" b0135 9 69 -1.00 0.000 -66 67 -1.00 0.000 39 1 0.000231 0.000004 P5 4 1 1080 1.00 0.000 yadC b0135 putative fimbrial-like protein Putative cell structure putative structure; Not classified b0136 2296 2561 -1.12 -0.047 931 1209 -1.30 -0.114 2429 1070 0.014331 0.006442 B7 4 1 1081 2.22 0.347 yadK b0136 putative fimbrial protein "Hypothetical, unclassified, unknown" orf; Not classified b0137 1004 1216 -1.21 -0.083 704 648 1.09 0.036 1110 676 0.006551 0.004069 D7 4 1 1082 1.61 0.207 yadL b0137 putative fimbrial protein "Hypothetical, unclassified, unknown" orf; Not classified b0138 645 845 -1.31 -0.117 346 404 -1.00 0.000 745 375 0.004394 0.002257 F7 4 1 1083 1.46 0.166 yadM b0138 putative fimbrial-like protein Putative cell structure putative structure; Not classified b0139 504 613 -1.22 -0.086 325 310 1.00 0.000 558 317 0.003295 0.001911 I6 1 1 405 1.10 0.041 htrE b0139 probable outer membrane porin protein involved in fimbrial assembly putative membrane protein putative membrane; Surface structures b0140 4257 3470 1.23 0.089 2210 2132 1.04 0.016 3863 2171 0.022796 0.013071 K6 1 1 406 1.74 0.242 ecpD b0140 probable pilin chaperone similar to PapD Putative factors putative factor; Surface structures b0141 1956 2206 -1.13 -0.052 1159 1035 1.12 0.049 2081 1097 0.012279 0.006604 H7 4 1 1084 1.86 0.269 yadN b0141 putative fimbrial-like protein Putative cell structure putative structure; Not classified b0142 4267 4772 -1.12 -0.049 2491 3182 -1.28 -0.106 4519 2836 0.026666 0.017076 G20 4 2 2284 1.56 0.194 folK b0142 "7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase" "Biosynthesis of cofactors, prosthetic groups and carriers" "enzyme; Biosynthesis of cofactors, carriers: Folic acid" b0143 2318 2590 -1.12 -0.048 2938 2525 1.16 0.066 2454 2732 0.014480 0.016446 M19 1 2 1615 -1.14 -0.055 pcnB b0143 poly(A) polymerase I "Transcription, RNA processing and degradation" "enzyme; RNA synthesis, modification, DNA transcription" b0144 93 350 -1.00 0.000 208 488 -1.00 0.000 221 348 0.001306 0.002093 M9 2 2 1671 -1.00 0.000 yadB b0144 putative tRNA synthetase Putative enzymes "putative enzyme; Aminoacyl tRNA synthetases, tRNA modification" b0145 7717 8217 -1.06 -0.027 5379 5259 1.02 0.010 7967 5319 0.047011 0.032023 J16 4 1 1501 1.47 0.167 dksA b0145 dnaK suppressor protein "DNA replication, repair, restriction/modification" "phenotype; DNA - replication, repair, restriction/modification" b0146 829 739 1.12 0.050 537 603 -1.12 -0.050 784 570 0.004625 0.003433 K1 1 1 6 1.35 0.129 sfsA b0146 probable regulator for maltose metabolism Putative regulatory proteins putative regulator; Degradation of small molecules: Carbon compounds b0147 1212 1513 -1.25 -0.096 1130 1180 -1.04 -0.019 1362 1155 0.008037 0.006952 H23 4 2 2684 1.16 0.063 yadP b0147 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0148 2697 2650 1.02 0.008 4195 4071 1.03 0.013 2674 4133 0.015776 0.024884 O19 1 2 1616 -1.58 -0.198 hrpB b0148 "helicase, ATP-dependent" "DNA replication, repair, restriction/modification" "enzyme; DNA - replication, repair, restriction/modification" b0149 2594 2162 1.20 0.079 1416 1526 -1.08 -0.032 2378 1471 0.014033 0.008858 M6 1 1 407 1.58 0.200 mrcB b0149 peptidoglycan synthetase; penicillin-binding protein 1B Cell structure "enzyme; Murein sacculus, peptidoglycan" b0150 3376 3366 1.00 0.001 3417 3160 1.08 0.034 3371 3288 0.019890 0.019798 O6 1 1 408 1.00 0.002 fhuA b0150 "outer membrane protein receptor for ferrichrome, colicin M, and phages T1, T5, and phi80" Cell structure membrane; Outer membrane constituents b0151 692 594 1.16 0.066 407 431 -1.00 0.000 643 419 0.003794 0.002523 O16 3 1 640 1.26 0.102 fhuC b0151 ATP-binding component of hydroxymate-dependent iron transport Transport and binding proteins transport; Transport of small molecules: Cations b0152 1753 1520 1.15 0.062 1651 1706 -1.03 -0.014 1637 1678 0.009659 0.010105 A18 3 1 641 -1.05 -0.020 fhuD b0152 "hydroxamate-dependent iron uptake, cytoplasmic membrane component" Transport and binding proteins transport; Transport of small molecules: Cations b0153 1018 788 1.29 0.111 315 480 -1.00 0.000 903 397 0.005327 0.002393 C18 3 1 642 1.78 0.249 fhuB b0153 "hydroxamate-dependent iron uptake, cytoplasmic membrane component" Transport and binding proteins transport; Transport of small molecules: Cations b0154 2893 3044 -1.05 -0.022 2006 1977 1.01 0.006 2969 1992 0.017517 0.011991 I20 4 2 2285 1.46 0.165 hemL b0154 glutamate-1-semialdehyde aminotransferase (aminomutase) "Biosynthesis of cofactors, prosthetic groups and carriers" "enzyme; Biosynthesis of cofactors, carriers: Heme, porphyrin" b0155 2963 2937 1.01 0.004 1549 1753 -1.13 -0.054 2950 1651 0.017407 0.009939 L13 2 1 918 1.75 0.243 yadQ b0155 putative channel transporter Putative transport proteins putative transport; Not classified b0156 2101 2331 -1.11 -0.045 1520 1996 -1.31 -0.118 2216 1758 0.013077 0.010584 J23 4 2 2685 1.24 0.092 yadR b0156 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0157 3925 4589 -1.17 -0.068 3189 3973 -1.25 -0.095 4257 3581 0.025119 0.021558 L23 4 2 2686 1.17 0.066 yadS b0157 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0158 313 529 -1.06 -0.025 473 502 -1.00 -0.001 421 487 0.002483 0.002933 N23 4 2 2687 -1.00 0.000 yadT b0158 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0159 636 472 1.27 0.105 1605 1950 -1.22 -0.085 554 1778 0.003270 0.010702 P23 4 2 2688 -3.27 -0.515 pfs b0159 "orf, hypothetical protein" Nucleotide biosynthesis and metabolism enzyme; Salvage of nucleosides and nucleotides b0160 486 553 -1.11 -0.044 519 464 1.04 0.016 520 492 0.003067 0.002961 C20 2 2 2090 1.02 0.010 dgt b0160 deoxyguanosine triphosphate triphosphohydrolase Central intermediary metabolism enzyme; Central intermediary metabolism: Nucleotide hydrolysis b0161 13614 14851 -1.09 -0.038 8920 9030 -1.01 -0.005 14232 8975 0.083981 0.054036 O9 2 2 1672 1.55 0.192 htrA b0161 periplasmic serine protease Do; heat shock protein HtrA Cell processes "enzyme; Degradation of proteins, peptides, glyco" b0162 104 118 -1.00 0.000 -36 277 -1.00 0.000 111 120 0.000654 0.000725 O19 2 1 176 -1.00 0.000 yaeG b0162 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0163 1331 865 1.54 0.187 281 211 1.00 0.000 1098 246 0.006477 0.001484 M4 3 1 591 2.16 0.334 yaeH b0163 putative structural protein Putative cell structure putative structure; Not classified b0164 4004 4202 -1.05 -0.021 3508 3000 1.17 0.068 4103 3254 0.024209 0.019593 B2 1 2 2689 1.24 0.092 yaeI b0164 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0165 456 286 1.00 0.000 56 14 1.00 0.000 371 35 0.002188 0.000210 D2 1 2 2690 1.00 0.000 b0165 b0165 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0166 2900 3430 -1.18 -0.073 2186 2285 -1.04 -0.019 3165 2236 0.018675 0.013459 O9 4 2 1864 1.39 0.142 dapD b0166 "2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase" Amino acid biosynthesis enzyme; Amino acid biosynthesis: Lysine b0167 2158 2400 -1.11 -0.046 1139 1718 -1.51 -0.178 2279 1429 0.013447 0.008602 A11 4 2 1865 1.56 0.194 glnD b0167 protein PII; uridylyltransferase acts on regulator of glnA Regulatory function enzyme; Amino acid biosynthesis: Glutamine b0168 965 1044 -1.08 -0.034 1345 2156 -1.60 -0.205 1004 1751 0.005926 0.010539 A11 2 2 1673 -1.78 -0.250 map b0168 methionine aminopeptidase "Translation, post-translational modification" enzyme; Proteins - translation and modification b0169 5061 5738 -1.13 -0.055 17444 19258 -1.10 -0.043 5399 18351 0.031859 0.110481 C11 2 2 1674 -3.47 -0.540 rpsB b0169 30S ribosomal subunit protein S2 "Translation, post-translational modification" "structural component; Ribosomal proteins - synthesis, modification" b0170 3366 3179 1.06 0.025 29747 32984 -1.11 -0.045 3272 31365 0.019309 0.188838 E11 2 2 1675 -9.78 -0.990 tsf b0170 protein chain elongation factor EF-Ts "Translation, post-translational modification" factor; Proteins - translation and modification b0171 4056 3627 1.12 0.049 5859 7151 -1.22 -0.087 3842 6505 0.022668 0.039162 E20 2 2 2091 -1.73 -0.237 pyrH b0171 uridylate kinase Nucleotide biosynthesis and metabolism enzyme; Central intermediary metabolism: Nucleotide interconversions b0172 2487 1825 1.36 0.135 2414 2961 -1.23 -0.089 2156 2688 0.012721 0.016180 G11 2 2 1676 -1.27 -0.104 frr b0172 ribosome releasing factor "Translation, post-translational modification" factor; Proteins - translation and modification b0173 356 582 -1.16 -0.066 325 497 -1.00 0.000 469 411 0.002767 0.002477 N13 2 1 919 1.00 0.000 yaeM b0173 putative ATP-binding component of a transport system Putative transport proteins putative transport; Not classified b0174 5373 3986 1.35 0.130 7664 7523 1.02 0.008 4679 7593 0.027612 0.045717 F2 1 2 2691 -1.66 -0.219 yaeS b0174 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0175 527 626 -1.19 -0.075 1204 1322 -1.10 -0.041 577 1263 0.003403 0.007605 O6 2 2 2040 -2.23 -0.349 cdsA b0175 CDP-diglyceride synthetase Fatty acid and phospholipid metabolism enzyme; Fatty acid and phosphatidic acid biosynthesis b0176 2154 1773 1.21 0.084 2093 2257 -1.08 -0.033 1964 2175 0.011587 0.013095 H2 1 2 2692 -1.13 -0.053 yaeL b0176 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0177 4346 3404 1.28 0.106 5322 5061 1.05 0.022 3875 5191 0.022866 0.031255 J2 1 2 2693 -1.37 -0.136 yaeT b0177 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0178 7315 7007 1.04 0.019 6595 7326 -1.11 -0.046 7161 6961 0.042255 0.041906 A8 1 1 409 1.01 0.004 hlpA b0178 "histone-like protein, located in outer membrane or nucleoid" "DNA replication, repair, restriction/modification" "factor; Basic proteins - synthesis, modification" b0179 38245 35415 1.08 0.033 26483 24921 1.06 0.026 36830 25702 0.217321 0.154742 C8 1 1 410 1.40 0.147 lpxD b0179 UDP-3-O-(3-hydroxymyristoyl)-glucosamine N-acyltransferase; third step of endotoxin (lipidA) synthesis Cell structure enzyme; Surface polysaccharides & antigens b0180 317 853 -1.71 -0.232 2138 2510 -1.17 -0.070 585 2324 0.003454 0.013994 A8 2 2 2041 -4.05 -0.608 fabZ b0180 (3R)-hydroxymyristol acyl carrier protein dehydratase Fatty acid and phospholipid metabolism enzyme; Fatty acid and phosphatidic acid biosynthesis b0181 2689 2568 1.05 0.020 4104 4052 1.01 0.005 2629 4078 0.015512 0.024553 E8 1 1 411 -1.58 -0.199 lpxA b0181 UDP-N-acetylglucosamine acetyltransferase; lipid A biosynthesis Cell structure enzyme; Surface polysaccharides & antigens b0182 4189 4484 -1.07 -0.030 5489 5900 -1.07 -0.031 4337 5694 0.025590 0.034282 G8 1 1 412 -1.34 -0.127 lpxB b0182 "tetraacyldisaccharide-1-P; lipid A biosynthesis, penultimate step" Cell structure enzyme; Macromolecule metabolism: Lipopolysaccharide b0183 559 486 1.12 0.049 786 1083 -1.38 -0.139 523 935 0.003083 0.005627 L16 4 1 1502 -1.82 -0.261 rnhB b0183 "RNAse HII, degrades RNA of DNA-RNA hybrids" "Transcription, RNA processing and degradation" enzyme; Degradation of RNA b0184 132 287 -1.00 0.000 414 437 -1.00 0.000 210 425 0.001237 0.002561 N16 4 1 1503 -1.00 0.000 dnaE b0184 "DNA polymerase III, alpha subunit" "DNA replication, repair, restriction/modification" "enzyme; DNA - replication, repair, restriction/modification" b0185 1182 1361 -1.15 -0.061 2317 2594 -1.12 -0.049 1271 2456 0.007502 0.014784 C8 2 2 2042 -1.97 -0.295 accA b0185 "acetylCoA carboxylase, carboxytransferase component, alpha subunit" Fatty acid and phospholipid metabolism enzyme; Fatty acid and phosphatidic acid biosynthesis b0186 -47 156 -1.00 0.000 -26 38 -1.00 0.000 54 6 0.000320 0.000037 F6 2 1 1267 1.00 0.000 ldcC b0186 "lysine decarboxylase 2, constitutive" Central intermediary metabolism "enzyme; Energy metabolism, carbon: Pyruvate dehydrogenase" b0187 989 839 1.18 0.071 572 740 -1.29 -0.112 914 656 0.005395 0.003949 L2 1 2 2694 1.37 0.135 yaeR b0187 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0188 1299 1086 1.20 0.078 735 739 -1.01 -0.003 1192 737 0.007035 0.004436 J7 4 1 1085 1.59 0.200 mesJ b0188 cell cycle protein Cell processes orf; Cell division b0189 6184 6792 -1.10 -0.041 4961 5155 -1.04 -0.017 6488 5058 0.038284 0.030454 N2 1 2 2695 1.26 0.099 yaeO b0189 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0190 8847 8492 1.04 0.018 11164 10724 1.04 0.017 8670 10944 0.051156 0.065890 P2 1 2 2696 -1.29 -0.110 yaeQ b0190 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0191 139 148 -1.00 0.000 63 100 -1.00 0.000 143 81 0.000847 0.000490 B4 1 2 2697 1.00 0.000 yaeJ b0191 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0192 1354 1328 1.02 0.008 453 585 -1.17 -0.068 1341 519 0.007912 0.003125 L7 4 1 1086 2.53 0.403 cutF b0192 copper homeostasis protein (lipoprotein) Putative transport proteins putative transport; Detoxification b0193 284 215 1.00 0.000 269 158 1.00 0.000 249 213 0.001472 0.001283 D4 1 2 2698 1.00 0.000 yaeF b0193 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0194 1616 2187 -1.35 -0.131 2112 2064 1.02 0.010 1901 2088 0.011218 0.012570 I11 2 2 1677 -1.12 -0.049 proS b0194 proline tRNA synthetase "Translation, post-translational modification" "enzyme; Aminoacyl tRNA synthetases, tRNA modification" b0195 483 235 1.00 0.000 210 198 1.00 0.000 359 204 0.002121 0.001230 F4 1 2 2699 1.00 0.000 yaeB b0195 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0196 1935 1763 1.10 0.040 972 1262 -1.30 -0.113 1849 1117 0.010911 0.006725 I8 1 1 413 1.62 0.210 rcsF b0196 regulator in colanic acid synthesis; interacts with RcsB Regulatory function regulator; Surface polysaccharides & antigens b0197 7404 7450 -1.01 -0.003 2578 2444 1.05 0.023 7427 2511 0.043825 0.015119 K8 1 1 414 2.90 0.462 yaeC b0197 putative lipoprotein putative membrane protein putative membrane; Not classified b0198 1450 1414 1.03 0.011 801 381 1.60 0.205 1432 591 0.008451 0.003556 A2 3 1 577 2.38 0.376 yaeE b0198 putative transport system permease protein Putative transport proteins putative transport; Not classified b0199 1357 1295 1.05 0.020 980 576 1.70 0.231 1326 778 0.007823 0.004686 E18 3 1 643 1.67 0.223 abc b0199 ATP-binding component of a transporter Putative transport proteins transport; Not classified b0200 10022 9500 1.05 0.023 4232 4922 -1.16 -0.066 9761 4577 0.057596 0.027556 G20 2 2 2092 2.09 0.320 yaeD b0200 putative phosphatase Putative enzymes putative enzyme; Not classified b0207 664 628 1.06 0.024 546 655 -1.20 -0.079 646 601 0.003812 0.003616 I20 2 2 2093 1.05 0.023 yafB b0207 putative aldose reductase (EC 1.1.1.21) Putative enzymes putative enzyme; Not classified b0208 2611 2621 -1.00 -0.002 2514 2772 -1.10 -0.042 2616 2643 0.015437 0.015915 A21 2 1 177 -1.03 -0.013 yafC b0208 putative transcriptional regulator LYSR-type Putative regulatory proteins putative transport; Not classified b0209 1371 1224 1.12 0.049 1062 847 1.25 0.099 1297 955 0.007655 0.005747 H4 1 2 2700 1.33 0.125 yafD b0209 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0210 1251 916 1.36 0.135 618 525 1.18 0.070 1083 571 0.006393 0.003440 N19 1 2 2383 1.86 0.269 yafE b0210 putative biotin synthesis protein Putative enzymes putative enzyme; Not classified b0211 3572 2979 1.20 0.079 2163 2456 -1.14 -0.055 3275 2310 0.019327 0.013906 H6 2 1 1268 1.39 0.143 dniR b0211 transcriptional regulator for nitrite reductase (cytochrome c552) Regulatory function "regulator; Energy metabolism, carbon: Anaerobic respiration" b0212 541 502 1.08 0.033 455 321 1.00 0.000 522 388 0.003077 0.002336 J4 1 2 2701 1.03 0.011 gloB b0212 probable hydroxyacylglutathione hydrolase Putative enzymes "putative enzyme; Central intermediary metabolism: Pool, multipurpose conversions" b0213 308 163 1.00 0.000 339 242 1.00 0.000 235 291 0.001389 0.001750 L4 1 2 2702 -1.00 0.000 yafS b0213 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0214 719 651 1.11 0.043 479 490 -1.00 0.000 685 484 0.004041 0.002917 P16 4 1 1504 1.35 0.129 rnhA b0214 "RNase HI, degrades RNA of DNA-RNA hybrids, participates in DNA replication" "Transcription, RNA processing and degradation" enzyme; Degradation of RNA b0215 1168 1348 -1.15 -0.062 463 626 -1.25 -0.098 1258 544 0.007424 0.003278 B18 4 1 1505 2.26 0.355 dnaQ b0215 "DNA polymerase III, epsilon subunit" "DNA replication, repair, restriction/modification" "enzyme; DNA - replication, repair, restriction/modification" b0217 -53 209 -1.00 0.000 194 131 1.00 0.000 78 162 0.000463 0.000978 K20 2 2 2094 -1.00 0.000 yafT b0217 putative aminopeptidase Putative enzymes putative enzyme; Not classified b0218 122 258 -1.00 0.000 227 134 1.00 0.000 190 181 0.001120 0.001087 N4 1 2 2703 1.00 0.000 yafU b0218 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0219 4304 3660 1.18 0.070 4243 4373 -1.03 -0.013 3982 4308 0.023496 0.025937 M20 2 2 2095 -1.10 -0.043 yafV b0219 putative EC 3.5. amidase-type enzyme Putative enzymes putative enzyme; Not classified b0220 1682 1666 1.01 0.004 518 377 1.04 0.015 1674 447 0.009878 0.002694 P4 1 2 2704 3.29 0.518 ykfE b0220 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0221 2423 1959 1.24 0.092 2746 2636 1.04 0.018 2191 2691 0.012929 0.016200 O20 2 2 2096 -1.25 -0.098 yafH b0221 putative acyl-CoA dehydrogenase (EC 1.3.99.-) Putative enzymes putative enzyme; Not classified b0222 2581 2308 1.12 0.049 1639 1920 -1.17 -0.069 2444 1780 0.014423 0.010714 M8 1 1 415 1.35 0.129 gmhA b0222 phosphoheptose isomerase Cell structure enzyme; Surface polysaccharides & antigens b0223 10124 10226 -1.01 -0.004 14324 13392 1.07 0.029 10175 13858 0.060041 0.083431 A22 2 2 2097 -1.39 -0.143 yafJ b0223 putative amidotransferase Putative enzymes putative enzyme; Not classified b0224 3053 2419 1.26 0.101 1727 1530 1.13 0.053 2736 1628 0.016146 0.009804 B6 1 2 2705 1.65 0.217 yafK b0224 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0225 30 -43 1.00 0.000 32 -43 1.00 0.000 -6 -6 -0.000037 -0.000034 D6 1 2 2706 -1.00 0.000 yafQ b0225 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0226 1030 884 1.16 0.066 291 378 -1.00 0.000 957 335 0.005647 0.002014 P9 4 2 2632 1.88 0.275 dinJ b0226 damage-inducible protein J Cell processes phenotype; Not classified b0227 316 397 -1.00 0.000 172 177 -1.00 0.000 357 175 0.002104 0.001052 F6 1 2 2707 1.00 0.000 yafL b0227 putative lipoprotein putative membrane protein putative membrane; Not classified b0228 2535 1548 1.64 0.214 2227 2542 -1.14 -0.057 2041 2384 0.012046 0.014354 H6 1 2 2708 -1.19 -0.076 yafM b0228 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0229 606 733 -1.21 -0.083 1032 722 1.43 0.155 670 877 0.003951 0.005278 N7 4 1 1087 -1.34 -0.126 fhiA b0229 flagellar biosynthesis Putative factors putative enzyme; Surface structures b0230 1896 1917 -1.01 -0.005 810 819 -1.01 -0.005 1907 815 0.011251 0.004905 P7 4 1 1088 2.29 0.361 mbhA b0230 putative motility protein Putative cell structure putative structure; Not classified b0231 921 1203 -1.31 -0.116 787 781 1.01 0.003 1062 784 0.006265 0.004721 J6 1 2 2709 1.33 0.123 dinP b0231 damage-inducible protein P; putative tRNA synthetase Putative enzymes putative enzyme; Not classified b0232 224 100 1.00 0.000 157 49 1.00 0.000 162 103 0.000957 0.000619 L6 1 2 2710 1.00 0.000 yafN b0232 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0233 199 294 -1.00 0.000 149 170 -1.00 0.000 247 160 0.001455 0.000962 N6 1 2 2711 1.00 0.000 yafO b0233 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0234 2914 3084 -1.06 -0.025 1673 1620 1.03 0.014 2999 1646 0.017694 0.009912 P6 1 2 2712 1.79 0.252 yafP b0234 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0235 66 1 1.00 0.000 112 -82 1.00 0.000 34 15 0.000198 0.000090 B8 1 2 2713 1.00 0.000 b0235 b0235 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0236 703 447 1.41 0.148 908 884 1.03 0.012 575 896 0.003394 0.005393 K11 2 2 1678 -1.59 -0.201 prfH b0236 probable peptide chain release factor "Translation, post-translational modification" putative factor; Proteins - translation and modification b0237 2992 2954 1.01 0.006 2773 3098 -1.12 -0.048 2973 2936 0.017543 0.017675 M11 2 2 1679 -1.01 -0.003 pepD b0237 aminoacyl-histidine dipeptidase (peptidase D) Carbon compound catabolism "enzyme; Degradation of proteins, peptides, glyco" b0238 3400 2821 1.21 0.081 2899 2970 -1.02 -0.011 3110 2935 0.018354 0.017668 G18 1 2 1988 1.04 0.017 gpt b0238 guanine-hypoxanthine phosphoribosyltransferase Nucleotide biosynthesis and metabolism enzyme; Salvage of nucleosides and nucleotides b0239 2463 2327 1.06 0.025 1221 1165 1.05 0.021 2395 1193 0.014132 0.007183 D8 1 2 2714 1.97 0.294 yafA b0239 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0240 5620 5143 1.09 0.039 2816 3491 -1.24 -0.093 5381 3154 0.031753 0.018987 O8 1 1 416 1.67 0.223 crl b0240 transcriptional regulator of cryptic csgA gene for curli surface fibers Regulatory function regulator; Surface structures b0241 852 692 1.23 0.090 520 498 1.04 0.017 772 509 0.004554 0.003066 A10 1 1 417 1.49 0.172 phoE b0241 "outer membrane pore protein E (E,Ic,NmpAB)" Cell structure membrane; Outer membrane constituents b0242 6726 5748 1.17 0.068 6434 6421 1.00 0.001 6237 6427 0.036802 0.038697 C11 4 2 1866 -1.05 -0.022 proB b0242 gamma-glutamate kinase Amino acid biosynthesis enzyme; Amino acid biosynthesis: Proline b0243 3338 3420 -1.02 -0.011 2778 2481 1.12 0.049 3379 2629 0.019940 0.015831 E11 4 2 1867 1.26 0.100 proA b0243 gamma-glutamylphosphate reductase Amino acid biosynthesis enzyme; Amino acid biosynthesis: Proline b0245 71 12 1.00 0.000 182 83 1.00 0.000 41 132 0.000244 0.000796 F8 1 2 2715 -1.00 0.000 b0245 b0245 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0246 422 376 1.00 0.000 461 216 1.00 0.000 399 338 0.002355 0.002037 H8 1 2 2716 1.00 0.000 yafW b0246 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0247 527 586 -1.11 -0.046 299 324 -1.00 0.000 556 311 0.003282 0.001873 D18 4 1 1506 1.09 0.039 ykfG b0247 putative DNA repair protein Putative enzymes putative enzyme; Not classified b0248 231 372 -1.00 0.000 262 168 1.00 0.000 301 215 0.001778 0.001293 J8 1 2 2717 1.00 0.000 yafX b0248 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0249 1030 1015 1.01 0.006 697 543 1.28 0.109 1022 620 0.006031 0.003733 L8 1 2 2718 1.62 0.208 ykfF b0249 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0250 1336 1340 -1.00 -0.001 812 820 -1.01 -0.005 1338 816 0.007897 0.004913 N8 1 2 2719 1.61 0.206 ykfB b0250 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0251 1065 802 1.33 0.123 613 470 1.23 0.088 934 542 0.005510 0.003261 P8 1 2 2720 1.69 0.228 yafY b0251 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0252 109 139 -1.00 0.000 273 188 1.00 0.000 124 231 0.000732 0.001389 M5 4 1 311 -1.00 0.000 yafZ b0252 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0253 150 144 1.00 0.000 216 133 1.00 0.000 147 175 0.000868 0.001052 B10 1 2 2721 -1.00 0.000 ykfA b0253 putative GTP-binding protein "Hypothetical, unclassified, unknown" orf; Not classified b0254 213 383 -1.00 0.000 116 300 -1.00 0.000 298 208 0.001756 0.001252 C21 2 1 178 1.00 0.000 perR b0254 putative transcriptional regulator LYSR-type Putative regulatory proteins putative regulator; Not classified b0255 209 193 1.00 0.000 70 170 -1.00 0.000 201 120 0.001185 0.000721 D10 1 2 2722 1.00 0.000 yi91a b0255 "IS911 hypothetical protein, variant (IS911A)" "Phage, transposon, or plasmid" "IS, phage, Tn; Transposon-related functions" b0256 1638 1591 1.03 0.012 692 839 -1.21 -0.084 1615 766 0.009528 0.004609 O5 4 1 312 2.07 0.315 tra8_1 b0256 IS30 transposase "Phage, transposon, or plasmid" "IS, phage, Tn; Transposon-related functions" b0257 1875 1876 -1.00 0.000 3135 3264 -1.04 -0.017 1875 3199 0.011066 0.019262 A7 4 1 313 -1.74 -0.241 b0257 b0257 putative transposase "Phage, transposon, or plasmid" "IS, phage, Tn; Not classified" b0258 9581 9408 1.02 0.008 6916 6706 1.03 0.013 9495 6811 0.056026 0.041006 F10 1 2 2723 1.37 0.136 ykfC b0258 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0259 6227 5955 1.05 0.019 7155 8492 -1.19 -0.074 6091 7824 0.035941 0.047102 C7 4 1 314 -1.31 -0.117 trs5_1 b0259 IS5 transposase "Phage, transposon, or plasmid" "IS, phage, Tn; Transposon-related functions" b0260 2517 2717 -1.08 -0.033 3015 3145 -1.04 -0.018 2617 3080 0.015441 0.018543 C22 2 2 2098 -1.20 -0.079 ykfD b0260 putative amino acid/amine transport protein Putative transport proteins putative transport; Not classified b0261 1940 1869 1.04 0.016 2780 2893 -1.04 -0.017 1904 2836 0.011237 0.017076 C10 1 1 418 -1.52 -0.182 yagD b0261 putative enzyme Putative enzymes putative enzyme; Not classified b0262 1258 1606 -1.28 -0.106 1175 1571 -1.34 -0.126 1432 1373 0.008451 0.008264 E22 2 2 2099 1.02 0.010 afuC b0262 putative ATP-binding component of a transport system Putative transport proteins putative transport; Not classified b0263 603 521 1.16 0.064 155 184 -1.00 0.000 562 170 0.003317 0.001022 P13 2 1 920 1.11 0.044 b0263 b0263 putative transport system permease protein Putative transport proteins putative transport; Not classified b0264 1035 1193 -1.15 -0.061 1021 1157 -1.13 -0.054 1114 1089 0.006574 0.006557 E7 4 1 315 1.00 0.001 insB_2 b0264 IS1 protein InsB "Phage, transposon, or plasmid" "IS, phage, Tn; Transposon-related functions" b0265 18611 21065 -1.13 -0.054 16062 16340 -1.02 -0.007 19838 16201 0.117057 0.097540 G7 4 1 316 1.20 0.079 insA_2 b0265 IS1 protein InsA "Phage, transposon, or plasmid" "IS, phage, Tn; Transposon-related functions" b0266 215 457 -1.00 0.000 146 165 -1.00 0.000 336 156 0.001982 0.000938 H10 1 2 2724 1.00 0.000 yagB b0266 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0267 999 943 1.06 0.025 1364 1494 -1.10 -0.040 971 1429 0.005731 0.008605 J10 1 2 2725 -1.50 -0.177 yagA b0267 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0268 874 971 -1.11 -0.046 1077 1144 -1.06 -0.026 923 1110 0.005445 0.006684 G22 2 2 2100 -1.23 -0.089 yagE b0268 putative lyase/synthase Putative enzymes putative enzyme; Not classified b0269 4879 4684 1.04 0.018 2774 2927 -1.06 -0.023 4781 2850 0.028213 0.017159 G11 4 2 1868 1.64 0.216 yagF b0269 putative dehydratase Putative enzymes putative enzyme; Not classified b0270 2841 2828 1.00 0.002 1608 1573 1.02 0.010 2835 1591 0.016726 0.009577 M1 1 1 7 1.75 0.242 yagG b0270 putative permease Putative transport proteins putative transport; Not classified b0271 387 237 1.00 0.000 402 393 1.00 0.000 312 398 0.001843 0.002394 O1 1 1 8 -1.00 0.000 yagH b0271 putative beta-xylosidase (EC 3.2.1.37) Putative enzymes putative enzyme; Not classified b0272 1785 2254 -1.26 -0.101 1996 2240 -1.12 -0.050 2020 2118 0.011918 0.012749 E21 2 1 179 -1.07 -0.029 yagI b0272 putative regulator Putative regulatory proteins putative regulator; Not classified b0273 6857 8296 -1.21 -0.083 3753 3610 1.04 0.017 7576 3681 0.044707 0.022164 I11 4 2 1869 2.02 0.305 argF b0273 "ornithine carbamoyltransferase 2, chain F" Amino acid biosynthesis enzyme; Amino acid biosynthesis: Arginine b0274 1768 1549 1.14 0.057 1061 1025 1.03 0.015 1658 1043 0.009785 0.006279 I7 4 1 317 1.56 0.193 insB_3 b0274 IS1 protein InsB "Phage, transposon, or plasmid" "IS, phage, Tn; Transposon-related functions" b0275 15303 14115 1.08 0.035 8021 7703 1.04 0.018 14709 7862 0.086793 0.047334 K7 4 1 318 1.83 0.263 insA_3 b0275 IS1 protein InsA "Phage, transposon, or plasmid" "IS, phage, Tn; Transposon-related functions" b0276 349 154 1.00 0.000 367 179 1.00 0.000 251 273 0.001484 0.001643 L10 1 2 2726 -1.00 0.000 yagJ b0276 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0277 317 332 -1.00 0.000 277 292 -1.00 0.000 325 284 0.001916 0.001713 N10 1 2 2727 1.00 0.000 yagK b0277 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0278 1913 1851 1.03 0.014 1231 1333 -1.08 -0.035 1882 1282 0.011106 0.007721 G21 2 1 180 1.44 0.158 yagL b0278 DNA-binding protein Putative regulatory proteins phenotype; Not classified b0279 581 671 -1.16 -0.063 405 385 1.00 0.000 626 395 0.003695 0.002379 P10 1 2 2728 1.23 0.090 yagM b0279 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0280 401 332 1.00 0.000 167 121 1.00 0.000 366 144 0.002162 0.000864 B12 1 2 2729 1.00 0.000 yagN b0280 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0281 534 574 -1.07 -0.031 431 389 1.00 0.000 554 410 0.003271 0.002466 M7 4 1 319 1.09 0.038 intF b0281 putative phage integrase "Phage, transposon, or plasmid" "IS, phage, Tn; Not classified" b0282 3587 3643 -1.02 -0.007 2912 3108 -1.07 -0.028 3615 3010 0.021331 0.018123 D12 1 2 2730 1.18 0.071 yagP b0282 putative transcriptional regulator LYSR-type Putative regulatory proteins putative regulator; Not classified b0283 991 1223 -1.23 -0.091 1358 1326 1.02 0.011 1107 1342 0.006533 0.008079 F12 1 2 2731 -1.24 -0.092 yagQ b0283 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0284 2103 2056 1.02 0.010 2232 2069 1.08 0.033 2080 2150 0.012271 0.012947 H12 1 2 2732 -1.06 -0.023 yagR b0284 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0285 8643 9240 -1.07 -0.029 6942 6738 1.03 0.013 8942 6840 0.052762 0.041182 J12 1 2 2733 1.28 0.108 yagS b0285 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0286 4578 4146 1.10 0.043 4368 4685 -1.07 -0.030 4362 4526 0.025738 0.027251 I22 2 2 2101 -1.06 -0.025 yagT b0286 putative xanthine dehydrogenase (EC 1.1.1.20) Putative enzymes putative enzyme; Not classified b0287 2652 2713 -1.02 -0.010 1289 1478 -1.15 -0.060 2683 1383 0.015830 0.008329 L12 1 2 2734 1.90 0.279 yagU b0287 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0288 -113 347 -1.00 0.000 201 206 -1.00 0.000 117 203 0.000692 0.001224 J6 2 1 1269 -1.00 0.000 ykgJ b0288 putative ferredoxin Putative enzymes putative carrier; Not classified b0289 945 1055 -1.12 -0.048 643 817 -1.27 -0.104 1000 730 0.005900 0.004398 N12 1 2 2735 1.34 0.128 yagV b0289 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0290 -130 98 -1.00 0.000 56 129 -1.00 0.000 -16 92 -0.000095 0.000556 I21 2 1 181 -1.00 0.000 yagW b0290 putative receptor Putative factors putative factor; Not classified b0291 895 814 1.10 0.041 1300 1030 1.26 0.101 855 1165 0.005042 0.007013 P12 1 2 2736 -1.39 -0.143 yagX b0291 putative enzyme Putative enzymes putative enzyme; Not classified b0292 421 312 1.00 0.000 206 237 -1.00 0.000 366 221 0.002161 0.001333 B14 1 2 2737 1.00 0.000 yagY b0292 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0293 2211 1593 1.39 0.142 2112 1995 1.06 0.025 1902 2053 0.011224 0.012362 D14 1 2 2738 -1.10 -0.042 yagZ b0293 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0294 155 77 1.00 0.000 84 134 -1.00 0.000 116 109 0.000682 0.000656 K21 2 1 182 1.00 0.000 ykgK b0294 putative regulator Putative regulatory proteins putative regulator; Not classified b0295 228 -61 1.00 0.000 200 157 1.00 0.000 83 179 0.000491 0.001075 F14 1 2 2739 -1.00 0.000 ykgL b0295 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0296 22814 22403 1.02 0.008 18255 17155 1.06 0.027 22609 17705 0.133407 0.106594 O11 2 2 1680 1.25 0.097 ykgM b0296 putative ribosomal protein Putative cell structure putative structure; Not classified b0297 826 701 1.18 0.071 1258 1190 1.06 0.024 764 1224 0.004506 0.007369 O4 3 1 592 -1.64 -0.214 eaeH b0297 "attaching and effacing protein, pathogenesis factor" Cell processes factor; Not classified b0298 2263 2037 1.11 0.046 1158 1109 1.04 0.019 2150 1134 0.012688 0.006825 H14 1 2 2740 1.86 0.269 b0298 b0298 putative factor Putative factors putative factor; Not classified b0299 1891 1875 1.01 0.004 620 631 -1.02 -0.007 1883 626 0.011110 0.003767 O7 4 1 320 2.95 0.470 tra5_5 b0299 IS3 putative transposase "Phage, transposon, or plasmid" "IS, phage, Tn; Transposon-related functions" b0300 1398 1261 1.11 0.045 1146 1389 -1.21 -0.083 1330 1267 0.007847 0.007631 M21 2 1 183 1.03 0.012 ykgA b0300 putative ARAC-type regulatory protein Putative regulatory proteins putative regulator; Not classified b0301 69 129 -1.00 0.000 102 164 -1.00 0.000 99 133 0.000581 0.000800 J14 1 2 2741 -1.00 0.000 ykgB b0301 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0302 -17 48 -1.00 0.000 13 10 1.00 0.000 16 12 0.000092 0.000070 L14 1 2 2742 1.00 0.000 b0302 b0302 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0303 466 526 -1.05 -0.022 312 393 -1.00 0.000 496 352 0.002925 0.002120 N14 1 2 2743 1.00 0.000 ykgI b0303 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0304 2658 2903 -1.09 -0.038 1510 1433 1.05 0.023 2780 1472 0.016406 0.008859 B9 4 1 1089 1.85 0.268 ykgC b0304 putative oxidoreductase Putative enzymes putative enzyme; Not classified b0305 3285 3269 1.00 0.002 7195 7049 1.02 0.009 3277 7122 0.019337 0.042879 O21 2 1 184 -2.22 -0.346 ykgD b0305 putative ARAC-type regulatory protein Putative regulatory proteins putative regulator; Not classified b0306 560 464 1.12 0.049 305 471 -1.00 0.000 512 388 0.003020 0.002336 P14 1 2 2744 1.01 0.003 ykgE b0306 putative dehydrogenase subunit Putative enzymes putative enzyme; Not classified b0307 7220 7718 -1.07 -0.029 2986 3012 -1.01 -0.004 7469 2999 0.044072 0.018057 B16 1 2 2745 2.44 0.388 ykgF b0307 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0308 463 852 -1.70 -0.231 287 419 -1.00 0.000 657 353 0.003878 0.002124 B15 2 1 921 1.29 0.111 ykgG b0308 putative transporter Putative transport proteins putative transport; Not classified b0309 253 281 -1.00 0.000 319 165 1.00 0.000 267 242 0.001576 0.001457 D16 1 2 2746 1.00 0.000 b0309 b0309 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0310 678 564 1.20 0.080 321 383 -1.00 0.000 621 352 0.003665 0.002118 F16 1 2 2747 1.22 0.087 ykgH b0310 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0311 4231 3587 1.18 0.072 2261 2424 -1.07 -0.030 3909 2343 0.023066 0.014103 D9 4 1 1090 1.64 0.214 betA b0311 "choline dehydrogenase, a flavoprotein" Cell processes enzyme; Osmotic adaptation b0312 706 561 1.26 0.100 576 366 1.15 0.061 633 471 0.003737 0.002836 F9 4 1 1091 1.25 0.095 betB b0312 NAD+-dependent betaine aldehyde dehydrogenase Cell processes enzyme; Osmotic adaptation b0313 596 649 -1.09 -0.037 239 273 -1.00 0.000 623 256 0.003673 0.001542 H9 4 1 1092 1.22 0.088 betI b0313 probably transcriptional repressor of bet genes Cell processes putative regulator; Osmotic adaptation b0314 24620 19066 1.29 0.111 38523 37414 1.03 0.013 21843 37968 0.128887 0.228589 G18 3 1 644 -1.77 -0.249 betT b0314 high-affinity choline transport Transport and binding proteins transport; Transport of small molecules: Other b0315 993 800 1.24 0.094 382 293 1.00 0.000 896 338 0.005290 0.002032 H16 1 2 2748 1.76 0.246 yahA b0315 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0316 342 626 -1.25 -0.098 440 851 -1.70 -0.231 484 645 0.002857 0.003886 A23 2 1 185 -1.30 -0.112 yahB b0316 putative transcriptional regulator LYSR-type Putative regulatory proteins putative regulator; Not classified b0317 1612 998 1.62 0.208 772 758 1.02 0.008 1305 765 0.007702 0.004606 J16 1 2 2749 1.67 0.223 yahC b0317 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0318 301 495 -1.00 0.000 346 799 -1.60 -0.203 398 572 0.002347 0.003445 C23 2 1 186 -1.15 -0.060 yahD b0318 putative transcription factor Putative regulatory proteins putative regulator; Not classified b0319 473 598 -1.20 -0.078 395 398 -1.00 0.000 536 397 0.003160 0.002387 L16 1 2 2750 1.05 0.023 yahE b0319 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0320 4009 3709 1.08 0.034 2480 2419 1.03 0.011 3859 2449 0.022772 0.014746 N16 1 2 2751 1.54 0.189 yahF b0320 putative oxidoreductase subunit Putative enzymes putative enzyme; Not classified b0321 3401 3363 1.01 0.005 2418 2475 -1.02 -0.010 3382 2446 0.019954 0.014728 P16 1 2 2752 1.35 0.132 yahG b0321 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0322 7067 6180 1.14 0.058 4452 4109 1.08 0.035 6624 4281 0.039084 0.025771 B18 1 2 2753 1.52 0.181 yahH b0322 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0323 1693 1993 -1.18 -0.071 1758 1510 1.16 0.066 1843 1634 0.010874 0.009838 P19 1 2 2384 1.11 0.043 yahI b0323 putative kinase (EC 2.7.2.2). Putative enzymes putative enzyme; Not classified b0324 15331 16953 -1.11 -0.044 64301 60204 1.07 0.029 16142 62252 0.095248 0.374793 B21 1 2 2385 -3.93 -0.595 yahJ b0324 putative deaminase Putative enzymes putative enzyme; Not classified b0325 5170 4840 1.07 0.029 5431 5090 1.07 0.028 5005 5260 0.029531 0.031670 D21 1 2 2386 -1.07 -0.030 yahK b0325 putative oxidoreductase Putative enzymes putative enzyme; Not classified b0326 1300 1390 -1.07 -0.029 681 634 1.07 0.031 1345 658 0.007935 0.003960 D18 1 2 2754 2.00 0.302 yahL b0326 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0327 1313 928 1.41 0.151 1149 1210 -1.05 -0.022 1121 1180 0.006614 0.007102 F18 1 2 2755 -1.07 -0.031 yahM b0327 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0328 56574 58816 -1.04 -0.017 52907 52010 1.02 0.007 57695 52459 0.340439 0.315832 L6 2 1 1270 1.08 0.033 yahN b0328 putative cytochrome subunit of dehydrogenase Putative enzymes putative enzyme; Not classified b0329 9028 5667 1.59 0.202 318 409 -1.00 0.000 7347 364 0.043354 0.002189 H18 1 2 2756 14.45 1.160 yahO b0329 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0330 4512 5239 -1.16 -0.065 5221 6800 -1.30 -0.115 4875 6010 0.028767 0.036186 E23 2 1 187 -1.26 -0.100 prpR b0330 regulator for prp operon Regulatory function regulator; Not classified b0331 893 883 1.01 0.005 961 1130 -1.18 -0.070 888 1046 0.005239 0.006295 K22 2 2 2102 -1.20 -0.080 prpB b0331 putative phosphonomutase 2 Putative enzymes putative enzyme; Not classified b0332 386 397 -1.00 0.000 413 431 -1.00 0.000 391 422 0.002309 0.002539 J18 1 2 2757 -1.00 0.000 b0332 b0332 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0333 819 1293 -1.58 -0.198 1961 2072 -1.06 -0.024 1056 2017 0.006231 0.012143 M22 2 2 2103 -1.95 -0.290 prpC b0333 putative citrate synthase; propionate metabolism? Putative enzymes putative enzyme; Not classified b0334 1331 1407 -1.06 -0.024 1162 1125 1.03 0.014 1369 1143 0.008077 0.006884 L18 1 2 2758 1.17 0.069 prpD b0334 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0335 4207 3659 1.15 0.061 4158 3412 1.22 0.086 3933 3785 0.023207 0.022787 N18 1 2 2759 1.02 0.008 prpE b0335 putative propionyl-CoA synthetase Putative enzymes putative enzyme; Not classified b0336 1897 2677 -1.41 -0.149 1228 1413 -1.15 -0.061 2287 1320 0.013495 0.007950 I18 3 1 645 1.70 0.230 codB b0336 cytosine permease/transport Transport and binding proteins "transport; Transport of small molecules: Nucleosides, purines, pyrimidines" b0337 1100 955 1.15 0.062 1438 1253 1.15 0.060 1028 1345 0.006063 0.008099 I18 1 2 1989 -1.34 -0.126 codA b0337 cytosine deaminase Nucleotide biosynthesis and metabolism enzyme; Salvage of nucleosides and nucleotides b0338 2427 2601 -1.07 -0.030 1872 1687 1.11 0.045 2514 1780 0.014835 0.010715 A3 1 1 9 1.38 0.141 cynR b0338 cyn operon positive regulator Regulatory function "regulator; Central intermediary metabolism: Pool, multipurpose conversions" b0339 3964 3021 1.31 0.118 4850 4994 -1.03 -0.013 3492 4922 0.020608 0.029631 O22 2 2 2104 -1.44 -0.158 cynT b0339 carbonic anhydrase Central intermediary metabolism "enzyme; Central intermediary metabolism: Pool, multipurpose conversions" b0340 178 69 1.00 0.000 164 33 1.00 0.000 123 98 0.000729 0.000590 L6 2 3 2105 1.00 0.000 cynS b0340 "cyanate aminohydrolase, cyanase" Central intermediary metabolism "enzyme; Central intermediary metabolism: Pool, multipurpose conversions" b0341 2657 2097 1.27 0.103 540 789 -1.46 -0.165 2377 665 0.014026 0.004003 K18 3 1 646 3.50 0.545 cynX b0341 cyanate transport Transport and binding proteins transport; Transport of small molecules: Anions b0342 967 849 1.14 0.057 504 271 1.01 0.003 908 388 0.005356 0.002334 C3 1 1 10 1.79 0.252 lacA b0342 thiogalactoside acetyltransferase Carbon compound catabolism enzyme; Degradation of small molecules: Carbon compounds b0343 4892 4843 1.01 0.004 3208 3188 1.01 0.003 4868 3198 0.028723 0.019254 M18 3 1 647 1.49 0.174 lacY b0343 galactoside permease (M protein) Transport and binding proteins "transport; Transport of small molecules: Carbohydrates, organic acids, alcohols" b0344 240 298 -1.00 0.000 77 188 -1.00 0.000 269 132 0.001587 0.000797 E3 1 1 11 1.00 0.000 lacZ b0344 beta-D-galactosidase Carbon compound catabolism enzyme; Degradation of small molecules: Carbon compounds b0345 4812 4153 1.16 0.064 3758 3983 -1.06 -0.025 4482 3870 0.026449 0.023302 G3 1 1 12 1.14 0.055 lacI b0345 transcriptional repressor of the lac operon Regulatory function regulator; Degradation of small molecules: Carbon compounds b0346 1265 1624 -1.28 -0.109 2015 2052 -1.02 -0.008 1445 2033 0.008526 0.012242 G23 2 1 188 -1.44 -0.157 mhpR b0346 transcriptional regulator for mhp operon Regulatory function regulator; Not classified b0347 1235 810 1.53 0.184 1420 1071 1.33 0.123 1022 1246 0.006033 0.007499 P18 1 2 2760 -1.24 -0.094 mhpA b0347 3-(3-hydroxyphenyl)propionate hydroxylase Carbon compound catabolism enzyme; Degradation of small molecules: Carbon compounds b0348 575 514 1.12 0.049 408 375 1.00 0.000 545 392 0.003214 0.002357 I3 1 1 13 1.07 0.030 mhpB b0348 "2,3-dihydroxyphenylpropionate 1,2-dioxygenase" Carbon compound catabolism enzyme; Degradation of small molecules: Carbon compounds b0349 338 439 -1.00 0.000 502 253 1.00 0.002 389 378 0.002294 0.002274 K3 1 1 14 1.00 0.000 mhpC b0349 "2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase" Carbon compound catabolism enzyme; Degradation of small molecules: Carbon compounds b0350 2403 3112 -1.30 -0.112 2028 1850 1.10 0.040 2757 1939 0.016270 0.011673 F21 1 2 2387 1.39 0.144 mhpD b0350 2-keto-4-pentenoate hydratase Carbon compound catabolism enzyme; Degradation of small molecules: Carbon compounds b0351 4990 4189 1.19 0.076 2365 2551 -1.08 -0.033 4589 2458 0.027080 0.014799 M3 1 1 15 1.83 0.262 mhpF b0351 acetaldehyde dehydrogenase Carbon compound catabolism enzyme; Degradation of small molecules: Carbon compounds b0352 1153 812 1.42 0.153 1078 922 1.17 0.068 983 1000 0.005798 0.006021 O3 1 1 16 -1.04 -0.016 mhpE b0352 4-hydroxy-2-ketovalerate aldolase Carbon compound catabolism enzyme; Degradation of small molecules: Carbon compounds b0353 1276 2086 -1.63 -0.213 2451 3068 -1.25 -0.097 1681 2760 0.009919 0.016616 D15 2 1 922 -1.68 -0.224 mhpT b0353 putative transport protein Putative transport proteins putative transport; Not classified b0354 3376 4228 -1.25 -0.098 2421 2816 -1.16 -0.066 3802 2618 0.022433 0.015764 F18 4 1 1507 1.42 0.153 yaiL b0354 nucleoprotein/polynucleotide-associated enzyme Putative enzymes putative enzyme; Not classified b0355 723 820 -1.13 -0.055 1039 1182 -1.14 -0.056 771 1111 0.004552 0.006686 C24 2 2 2106 -1.47 -0.167 yaiM b0355 putative esterase (EC 3.1.1.1) Putative enzymes putative enzyme; Not classified b0356 1810 1924 -1.06 -0.026 591 905 -1.53 -0.185 1867 748 0.011018 0.004502 N6 2 1 1271 2.45 0.389 adhC b0356 "alcohol dehydrogenase class III; formaldehyde dehydrogenase, glutathione-dependent" Energy metabolism "enzyme; Energy metabolism, carbon: Fermentation" b0357 559 129 1.12 0.048 1311 1067 1.23 0.089 344 1189 0.002029 0.007157 A6 3 1 593 -2.39 -0.378 yaiN b0357 putative alpha helix chain "Hypothetical, unclassified, unknown" phenotype; Not classified b0358 1729 1605 1.08 0.032 1039 899 1.16 0.063 1667 969 0.009837 0.005832 B20 1 2 2761 1.69 0.227 yaiO b0358 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0359 952 714 1.33 0.125 512 385 1.02 0.010 833 449 0.004914 0.002701 D20 1 2 2762 1.64 0.214 b0359 b0359 putative transferase Putative enzymes putative enzyme; Not classified b0360 24851 22332 1.11 0.046 12488 12439 1.00 0.002 23592 12464 0.139208 0.075037 F20 1 2 2763 1.86 0.268 yi21_1 b0360 IS2 hypothetical protein "Phage, transposon, or plasmid" "IS, phage, Tn; Transposon-related functions" b0361 3639 4313 -1.19 -0.074 6701 7502 -1.12 -0.049 3976 7101 0.023462 0.042755 A21 1 2 1617 -1.82 -0.261 yi22_1 b0361 IS2 hypothetical protein "Phage, transposon, or plasmid" "IS, phage, Tn; Transposon-related functions" b0362 3006 2919 1.03 0.013 1494 1634 -1.09 -0.039 2963 1564 0.017481 0.009417 H20 1 2 2764 1.86 0.269 b0362 b0362 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0363 444 337 1.00 0.000 224 448 -1.00 0.000 391 336 0.002306 0.002022 E10 1 1 419 1.00 0.000 yaiP b0363 polysaccharide metabolism Putative enzymes putative enzyme; Not classified b0364 462 489 -1.00 0.000 289 239 1.00 0.000 475 264 0.002806 0.001588 J20 1 2 2765 1.00 0.000 yaiS b0364 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0365 514 790 -1.54 -0.187 90 442 -1.00 0.000 652 266 0.003846 0.001601 F15 2 1 923 1.28 0.108 tauA b0365 taurine transport system periplasmic protein Transport and binding proteins "transport; Transport of small molecules: Amino acids, amines" b0366 1679 1934 -1.15 -0.061 1451 1584 -1.09 -0.038 1806 1517 0.010658 0.009136 E24 2 2 2107 1.17 0.067 tauB b0366 taurine ATP-binding component of a transport system Transport and binding proteins "transport; Transport of small molecules: Amino acids, amines" b0367 2932 3604 -1.23 -0.090 2040 2169 -1.06 -0.027 3268 2104 0.019285 0.012669 H15 2 1 924 1.52 0.182 tauC b0367 taurine transport system permease protein Transport and binding proteins "transport; Transport of small molecules: Amino acids, amines" b0368 715 459 1.43 0.155 481 188 1.00 0.000 587 334 0.003461 0.002011 L20 1 2 2766 1.15 0.062 tauD b0368 "taurine dioxygenase, 2-oxoglutarate-dependent" Putative enzymes putative enzyme; Not classified b0369 330 276 1.00 0.000 186 322 -1.00 0.000 303 254 0.001789 0.001532 K20 4 2 2286 1.00 0.000 hemB b0369 5-aminolevulinate dehydratase = porphobilinogen synthase "Biosynthesis of cofactors, prosthetic groups and carriers" "enzyme; Biosynthesis of cofactors, carriers: Heme, porphyrin" b0370 207 95 1.00 0.000 86 38 1.00 0.000 151 62 0.000890 0.000375 N20 1 2 2767 1.00 0.000 b0370 b0370 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0371 7298 8343 -1.14 -0.058 10172 10690 -1.05 -0.022 7821 10431 0.046148 0.062801 P20 1 2 2768 -1.36 -0.134 yaiT b0371 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0372 7853 8092 -1.03 -0.013 6478 6506 -1.00 -0.002 7972 6492 0.047042 0.039083 A9 4 1 321 1.20 0.080 tra5_1 b0372 IS3 putative transposase "Phage, transposon, or plasmid" "IS, phage, Tn; Transposon-related functions" b0373 139 23 1.00 0.000 81 65 1.00 0.000 81 73 0.000478 0.000440 B22 1 2 2769 1.00 0.000 b0373 b0373 putative factor Putative factors putative factor; Not classified b0374 868 600 1.45 0.161 548 704 -1.29 -0.109 734 626 0.004331 0.003770 H21 1 2 2388 1.15 0.060 yaiU b0374 putative flagellin structural protein Putative cell structure putative structure; Not classified b0375 417 440 -1.00 0.000 603 549 1.10 0.041 428 576 0.002528 0.003469 D22 1 2 2770 -1.16 -0.063 yaiV b0375 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0376 989 1285 -1.30 -0.114 1053 1119 -1.06 -0.026 1137 1086 0.006711 0.006539 F22 1 2 2771 1.03 0.011 yaiH b0376 putative enzyme Putative enzymes putative enzyme; Not classified b0377 617 829 -1.34 -0.129 342 385 -1.00 0.000 723 364 0.004265 0.002189 J9 4 1 1093 1.42 0.153 sbmA b0377 "sensitivity to microcin B17, possibly envelop protein" Putative factors putative membrane; Drug/analog sensitivity b0378 4268 3549 1.20 0.080 4904 5065 -1.03 -0.014 3909 4984 0.023063 0.030009 H22 1 2 2772 -1.30 -0.114 yaiW b0378 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0379 417 371 1.00 0.000 277 271 1.00 0.000 394 274 0.002325 0.001650 J22 1 2 2773 1.00 0.000 b0379 b0379 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0380 794 965 -1.22 -0.085 914 758 1.21 0.082 879 836 0.005188 0.005033 L22 1 2 2774 1.03 0.013 b0380 b0380 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0381 554 511 1.09 0.035 885 1120 -1.27 -0.102 533 1003 0.003143 0.006036 G10 1 1 420 -1.92 -0.283 ddlA b0381 D-alanine-D-alanine ligase A Cell structure "enzyme; Murein sacculus, peptidoglycan" b0382 1423 1271 1.12 0.049 247 267 -1.00 0.000 1347 257 0.007951 0.001546 N22 1 2 2775 2.65 0.423 yaiB b0382 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0383 283 766 -1.53 -0.185 204 579 -1.16 -0.064 525 392 0.003097 0.002359 G24 2 2 2108 1.03 0.014 phoA b0383 alkaline phosphatase Central intermediary metabolism enzyme; Central intermediary metabolism: Phosphorus compounds b0384 2292 1851 1.24 0.093 1795 2021 -1.13 -0.052 2072 1908 0.012225 0.011485 I24 2 2 2109 1.06 0.027 psiF b0384 induced by phosphate starvation Cell processes phenotype; Central intermediary metabolism: Phosphorus compounds b0385 678 675 1.00 0.002 789 647 1.22 0.086 677 718 0.003993 0.004323 P22 1 2 2776 -1.08 -0.035 yaiC b0385 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0386 3475 3554 -1.02 -0.010 2141 3257 -1.52 -0.182 3514 2699 0.020736 0.016249 K11 4 2 1870 1.28 0.106 proC b0386 pyrroline-5-carboxylate reductase Amino acid biosynthesis enzyme; Amino acid biosynthesis: Proline b0387 5082 4798 1.06 0.025 3315 3036 1.09 0.038 4940 3176 0.029151 0.019119 B24 1 2 2777 1.52 0.183 yaiI b0387 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0388 5422 6418 -1.18 -0.073 3728 4537 -1.22 -0.085 5920 4132 0.034933 0.024879 M11 4 2 1871 1.40 0.147 aroL b0388 shikimate kinase II Amino acid biosynthesis enzyme; Amino acid biosynthesis: Chorismate b0389 5590 5059 1.10 0.043 2162 2417 -1.12 -0.048 5324 2290 0.031416 0.013785 D24 1 2 2778 2.28 0.358 yaiA b0389 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0390 8918 8957 -1.00 -0.002 6449 8255 -1.28 -0.107 8938 7352 0.052738 0.044261 O11 4 2 1872 1.19 0.076 aroM b0390 "protein of aro operon, regulated by aroR" Amino acid biosynthesis phenotype; Amino acid biosynthesis: Chorismate b0391 2101 2127 -1.01 -0.005 844 673 1.25 0.098 2114 759 0.012476 0.004567 F24 1 2 2779 2.73 0.436 yaiE b0391 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0392 6371 6775 -1.06 -0.027 4550 4304 1.06 0.024 6573 4427 0.038786 0.026653 H24 1 2 2780 1.46 0.163 b0392 b0392 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0393 6425 6000 1.07 0.030 3946 3992 -1.01 -0.005 6213 3969 0.036659 0.023894 J24 1 2 2781 1.53 0.186 yaiD b0393 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0394 800 982 -1.23 -0.089 484 541 -1.08 -0.034 891 512 0.005258 0.003083 L24 1 2 2782 1.71 0.232 yajF b0394 possible NAGC-like transcriptional regulator Putative regulatory proteins putative regulator; Not classified b0395 254 411 -1.00 0.000 283 311 -1.00 0.000 333 297 0.001963 0.001789 N24 1 2 2783 1.00 0.000 b0395 b0395 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0396 3230 2454 1.32 0.119 2699 3275 -1.21 -0.084 2842 2987 0.016770 0.017983 A5 1 1 17 -1.07 -0.030 araJ b0396 involved in either transport or processing of arabinose polymers Transport and binding proteins transport; Degradation of small molecules: Carbon compounds b0397 1487 1506 -1.01 -0.006 1411 1361 1.04 0.016 1496 1386 0.008829 0.008345 C21 1 2 1618 1.06 0.024 sbcC b0397 ATP-dependent dsDNA exonuclease "DNA replication, repair, restriction/modification" enzyme; Degradation of DNA b0398 6568 6638 -1.01 -0.005 5802 5549 1.05 0.019 6603 5675 0.038961 0.034169 E21 1 2 1619 1.14 0.057 sbcD b0398 ATP-dependent dsDNA exonuclease "DNA replication, repair, restriction/modification" enzyme; Degradation of DNA b0399 173 159 1.00 0.000 -40 201 -1.00 0.000 166 80 0.000978 0.000482 E9 2 1 131 1.00 0.000 phoB b0399 "positive response regulator for pho regulon, sensor is PhoR (or CreC)" Regulatory function regulator; Global regulatory functions b0400 457 470 -1.00 0.000 452 380 1.00 0.000 463 416 0.002733 0.002505 G9 2 1 132 1.00 0.000 phoR b0400 positive and negative sensor protein for pho regulon Regulatory function enzyme; Global regulatory functions b0401 1365 1638 -1.20 -0.079 546 845 -1.55 -0.190 1501 696 0.008858 0.004189 O18 3 1 648 2.11 0.325 brnQ b0401 branched chain amino acid transport system II carrier protein Transport and binding proteins "transport; Transport of small molecules: Amino acids, amines" b0402 2288 2218 1.03 0.013 2339 2771 -1.18 -0.074 2253 2555 0.013294 0.015381 J8 2 3 2784 -1.16 -0.063 proY b0402 proline permease transport protein Transport and binding proteins "transport; Transport of small molecules: Amino acids, amines" b0403 1106 582 1.90 0.279 529 525 1.01 0.003 844 527 0.004982 0.003175 C5 1 1 18 1.57 0.196 malZ b0403 maltodextrin glucosidase Carbon compound catabolism enzyme; Degradation of small molecules: Carbon compounds b0404 589 396 1.18 0.071 361 448 -1.00 0.000 492 405 0.002906 0.002437 I10 1 1 421 1.00 0.000 yajB b0404 putative glycoprotein "Hypothetical, unclassified, unknown" orf; Not classified b0405 10133 12132 -1.20 -0.078 8534 11480 -1.35 -0.129 11132 10007 0.065689 0.060249 A13 2 2 1681 1.09 0.038 queA b0405 synthesis of queuine in tRNA; probably S-adenosylmethionine:tRNA ribosyltransferase-isomerase "Translation, post-translational modification" "enzyme; Aminoacyl tRNA synthetases, tRNA modification" b0406 1349 1716 -1.27 -0.105 2294 2650 -1.16 -0.063 1532 2472 0.009042 0.014881 C13 2 2 1682 -1.65 -0.216 tgt b0406 tRNA-guanine transglycosylase "Translation, post-translational modification" "enzyme; Aminoacyl tRNA synthetases, tRNA modification" b0407 3635 3558 1.02 0.009 3066 3066 1.00 0.000 3597 3066 0.021224 0.018458 B2 2 2 2785 1.15 0.061 yajC b0407 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0408 2947 2199 1.34 0.127 3920 3590 1.09 0.038 2573 3755 0.015182 0.022607 A20 3 1 649 -1.49 -0.173 secD b0408 "protein secretion; membrane protein, part of the channel" Transport and binding proteins "transport; Protein, peptide secretion" b0409 844 521 1.62 0.210 1008 938 1.07 0.031 682 973 0.004026 0.005856 C20 3 1 650 -1.45 -0.163 secF b0409 "protein secretion, membrane protein" Transport and binding proteins "transport; Protein, peptide secretion" b0410 7547 4721 1.60 0.204 2751 2791 -1.01 -0.006 6134 2771 0.036196 0.016682 D2 2 2 2786 2.17 0.336 yajD b0410 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0411 1288 1174 1.10 0.040 2495 2536 -1.02 -0.007 1231 2515 0.007263 0.015144 E20 3 1 651 -2.09 -0.319 tsx b0411 nucleoside channel; receptor of phage T6 and colicin K Transport and binding proteins "transport; Transport of small molecules: Nucleosides, purines, pyrimidines" b0412 433 549 -1.10 -0.041 698 521 1.34 0.127 491 610 0.002897 0.003670 F2 2 2 2787 -1.22 -0.088 yajI b0412 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0413 3677 4298 -1.17 -0.068 5538 5635 -1.02 -0.008 3988 5587 0.023529 0.033635 H2 2 2 2788 -1.43 -0.155 ybaD b0413 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0414 1477 1793 -1.21 -0.084 1807 1896 -1.05 -0.021 1635 1851 0.009647 0.011145 M20 4 2 2287 -1.16 -0.063 ribD b0414 bifunctional pyrimidine deaminase/reductase in pathway of riboflavin synthesis "Biosynthesis of cofactors, prosthetic groups and carriers" "enzyme; Biosynthesis of cofactors, carriers: Riboflavin" b0415 4273 4439 -1.04 -0.017 3047 3379 -1.11 -0.045 4356 3213 0.025704 0.019344 O20 4 2 2288 1.33 0.123 ribH b0415 "riboflavin synthase, beta chain" "Biosynthesis of cofactors, prosthetic groups and carriers" "enzyme; Biosynthesis of cofactors, carriers: Riboflavin" b0416 1258 925 1.36 0.134 1870 1605 1.17 0.067 1092 1738 0.006442 0.010462 G21 1 2 1620 -1.62 -0.211 nusB b0416 transcription termination; L factor "Transcription, RNA processing and degradation" "factor; RNA synthesis, modification, DNA transcription" b0417 483 698 -1.40 -0.145 854 1000 -1.17 -0.068 590 927 0.003483 0.005583 I23 2 1 189 -1.60 -0.205 thiL b0417 thiamin-monophosphate kinase "Biosynthesis of cofactors, prosthetic groups and carriers" "enzyme; Biosynthesis of cofactors, carriers: Thiamin" b0418 4340 3016 1.44 0.158 6833 7016 -1.03 -0.011 3678 6924 0.021701 0.041688 J2 2 2 2789 -1.92 -0.284 pgpA b0418 phosphatidylglycerophosphatase Fatty acid and phospholipid metabolism "enzyme; Macromolecule synthesis, modification: Phospholipids" b0419 2169 1781 1.22 0.085 1032 737 1.40 0.146 1975 885 0.011654 0.005326 K24 2 2 2110 2.19 0.340 yajO b0419 putative NAD(P)H-dependent xylose reductase Putative enzymes putative enzyme; Not classified b0420 2020 2202 -1.09 -0.038 2601 2378 1.09 0.039 2111 2490 0.012456 0.014989 J21 1 2 2389 -1.20 -0.080 dxs b0420 1-deoxyxylulose-5-phosphate synthase; flavoprotein Central intermediary metabolism "enzyme; Central intermediary metabolism: Pool, multipurpose conversions" b0421 2073 2012 1.03 0.013 2665 2785 -1.04 -0.019 2042 2725 0.012052 0.016407 A22 4 2 2289 -1.36 -0.134 ispA b0421 geranyltranstransferase (farnesyldiphosphate synthase) "Biosynthesis of cofactors, prosthetic groups and carriers" "enzyme; Biosynthesis of cofactors, carriers: Menaquinone, ubiquinone" b0422 647 403 1.29 0.112 686 627 1.09 0.039 525 656 0.003097 0.003952 I21 1 2 1621 -1.28 -0.106 xseB b0422 "exonuclease VII, small subunit" "DNA replication, repair, restriction/modification" enzyme; Degradation of DNA b0423 1690 1232 1.37 0.137 1751 1895 -1.08 -0.034 1461 1823 0.008620 0.010978 L2 2 2 2790 -1.27 -0.105 yajK b0423 putative oxidoreductase Putative enzymes putative enzyme; Not classified b0424 636 545 1.17 0.067 586 394 1.17 0.069 590 490 0.003483 0.002950 N2 2 2 2791 1.16 0.065 thiJ b0424 4-methyl-5(beta-hydroxyethyl)-thiazole monophosphate synthesis "Biosynthesis of cofactors, prosthetic groups and carriers" "enzyme; Biosynthesis of cofactors, carriers: Biotin" b0425 1058 1370 -1.30 -0.112 1180 1211 -1.03 -0.011 1214 1196 0.007163 0.007200 P2 2 2 2792 -1.01 -0.002 apbA b0425 "involved in thiamin biosynthesis, alternative pyrimidine biosynthesis" "Biosynthesis of cofactors, prosthetic groups and carriers" phenotype; Not classified b0426 2980 2322 1.28 0.108 2123 2034 1.04 0.019 2651 2078 0.015642 0.012513 B4 2 2 2793 1.25 0.097 yajQ b0426 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0427 933 889 1.05 0.021 800 837 -1.05 -0.019 911 818 0.005376 0.004927 L9 4 1 1094 1.09 0.038 yajR b0427 putative transport protein Putative transport proteins putative transport; Not classified b0428 10069 9746 1.03 0.014 11363 9365 1.21 0.084 9908 10364 0.058462 0.062397 P6 2 1 1272 -1.07 -0.028 cyoE b0428 protoheme IX farnesyltransferase (haeme O biosynthesis) Energy metabolism "enzyme; Energy metabolism, carbon: Aerobic respiration" b0429 3377 3373 1.00 0.001 4161 4893 -1.18 -0.070 3375 4527 0.019915 0.027256 B8 2 1 1273 -1.37 -0.136 cyoD b0429 cytochrome o ubiquinol oxidase subunit IV Energy metabolism "enzyme; Energy metabolism, carbon: Aerobic respiration" b0430 3339 3210 1.04 0.017 5263 5416 -1.03 -0.012 3274 5340 0.019320 0.032149 D8 2 1 1274 -1.66 -0.221 cyoC b0430 cytochrome o ubiquinol oxidase subunit III Energy metabolism "enzyme; Energy metabolism, carbon: Aerobic respiration" b0431 8059 8806 -1.09 -0.038 11754 14779 -1.26 -0.099 8432 13266 0.049756 0.079870 F8 2 1 1275 -1.61 -0.206 cyoB b0431 cytochrome o ubiquinol oxidase subunit I Energy metabolism "enzyme; Energy metabolism, carbon: Aerobic respiration" b0432 3739 4968 -1.33 -0.123 12571 12074 1.04 0.017 4354 12323 0.025690 0.074189 H8 2 1 1276 -2.89 -0.461 cyoA b0432 cytochrome o ubiquinol oxidase subunit II Energy metabolism "enzyme; Energy metabolism, carbon: Aerobic respiration" b0433 397 592 -1.18 -0.073 574 591 -1.03 -0.013 495 583 0.002919 0.003508 N9 4 1 1095 -1.17 -0.068 ampG b0433 regulates beta-lactamase synthesis Regulatory function regulator; Drug/analog sensitivity b0434 2126 1777 1.20 0.078 2213 2373 -1.07 -0.030 1952 2293 0.011515 0.013805 L21 1 2 2390 -1.20 -0.079 yajG b0434 putative polymerase/proteinase Putative enzymes putative enzyme; Not classified b0435 6093 6080 1.00 0.001 1616 1643 -1.02 -0.007 6086 1630 0.035914 0.009811 K10 1 1 422 3.66 0.564 bolA b0435 possible regulator of murein genes Cell processes "putative regulator; Murein sacculus, peptidoglycan" b0436 4107 4135 -1.01 -0.003 5343 6052 -1.13 -0.054 4121 5697 0.024315 0.034302 P9 4 1 1096 -1.41 -0.149 tig b0436 trigger factor; a molecular chaperone involved in cell division Cell processes factor; Cell division b0437 -3948 2646 -5.29 -0.724 -2143 7015 -14.03 -1.147 -651 2436 -0.003839 0.014664 E13 2 2 1683 -4.89 -0.689 clpP b0437 "ATP-dependent proteolytic subunit of clpA-clpP serine protease, heat shock protein F21.5" Cell processes "enzyme; Degradation of proteins, peptides, glyco" b0438 6742 7246 -1.07 -0.031 3922 4517 -1.15 -0.061 6994 4219 0.041269 0.025403 G13 2 2 1684 1.62 0.211 clpX b0438 "ATP-dependent specificity component of clpP serine protease, chaperone" Carbon compound catabolism "enzyme; Degradation of proteins, peptides, glyco" b0439 13487 13302 1.01 0.006 8398 8734 -1.04 -0.017 13394 8566 0.079034 0.051573 I9 2 1 133 1.53 0.185 lon b0439 "DNA-binding, ATP-dependent protease La; heat shock K-protein" Regulatory function enzyme; Global regulatory functions b0440 9777 9617 1.02 0.007 4847 5597 -1.15 -0.062 9697 5222 0.057219 0.031442 H18 4 1 1508 1.82 0.260 hupB b0440 "DNA-binding protein HU-beta, NS1 (HU-1)" "DNA replication, repair, restriction/modification" "factor; Basic proteins - synthesis, modification" b0441 2757 3895 -1.41 -0.150 3846 4983 -1.30 -0.112 3326 4415 0.019627 0.026580 I13 2 2 1685 -1.35 -0.132 ybaU b0441 putative protease maturation protein Putative factors putative factor; Not classified b0442 226 607 -1.21 -0.084 437 814 -1.63 -0.212 417 625 0.002458 0.003765 D4 2 2 2794 -1.26 -0.099 ybaV b0442 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0443 3130 3078 1.02 0.007 1517 1567 -1.03 -0.014 3104 1542 0.018317 0.009285 F4 2 2 2795 1.97 0.295 ybaW b0443 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0444 2568 2284 1.12 0.051 1636 1848 -1.13 -0.053 2426 1742 0.014316 0.010489 H4 2 2 2796 1.36 0.135 ybaX b0444 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0445 1390 2388 -1.72 -0.235 1982 2390 -1.21 -0.081 1889 2186 0.011147 0.013159 J4 2 2 2797 -1.18 -0.072 ybaE b0445 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0446 684 1438 -2.10 -0.323 616 667 -1.08 -0.034 1061 641 0.006260 0.003860 L4 2 2 2798 1.62 0.210 cof b0446 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0447 220 416 -1.00 0.000 526 558 -1.06 -0.026 318 542 0.001876 0.003261 K23 2 1 190 -1.09 -0.036 ybaO b0447 putative LRP-like transcriptional regulator Putative regulatory proteins putative regulator; Not classified b0448 5209 5012 1.04 0.017 4631 4767 -1.03 -0.012 5110 4699 0.030154 0.028290 G20 3 1 652 1.07 0.028 mdlA b0448 ATP-binding component of a transport system Putative transport proteins transport; Not classified b0449 2126 2148 -1.01 -0.004 927 851 1.09 0.037 2137 889 0.012610 0.005353 I20 3 1 653 2.36 0.372 mdlB b0449 putative ATP-binding component of a transport system Putative transport proteins putative transport; Not classified b0450 113 504 -1.01 -0.004 140 266 -1.00 0.000 309 203 0.001821 0.001222 M24 2 2 2111 1.00 0.000 glnK b0450 nitrogen regulatory protein P-II 2 Regulatory function "regulator; Central intermediary metabolism: Pool, multipurpose conversions" b0451 12724 13907 -1.09 -0.039 24332 23666 1.03 0.012 13316 23999 0.078571 0.144488 O24 2 2 2112 -1.84 -0.265 amtB b0451 probable ammonium transporter Putative transport proteins "putative transport; Central intermediary metabolism: Pool, multipurpose conversions" b0452 1034 726 1.43 0.154 1416 1493 -1.05 -0.023 880 1454 0.005193 0.008756 E8 2 2 2043 -1.69 -0.227 tesB b0452 acyl-CoA thioesterase II Fatty acid and phospholipid metabolism enzyme; Fatty acid and phosphatidic acid biosynthesis b0453 1049 851 1.23 0.091 101 193 -1.00 0.000 950 147 0.005606 0.000883 M10 1 1 423 1.87 0.272 ybaY b0453 glycoprotein/polysaccharide metabolism Putative factors phenotype; Not classified b0454 850 859 -1.01 -0.005 985 823 1.20 0.078 855 904 0.005043 0.005445 N4 2 2 2799 -1.08 -0.033 ybaZ b0454 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0456 2372 1444 1.64 0.216 1722 1431 1.20 0.080 1908 1577 0.011260 0.009494 P4 2 2 2800 1.19 0.074 ybaA b0456 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0457 3136 3680 -1.17 -0.069 1912 2376 -1.24 -0.094 3408 2144 0.020108 0.012910 B6 2 2 2801 1.56 0.192 ylaB b0457 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0458 741 657 1.13 0.052 2630 2154 1.22 0.087 699 2392 0.004125 0.014402 D6 2 2 2802 -3.49 -0.543 ylaC b0458 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0459 196 349 -1.00 0.000 324 369 -1.00 0.000 273 347 0.001610 0.002087 F6 2 2 2803 -1.00 0.000 ylaD b0459 putative transferase Putative enzymes putative enzyme; Not classified b0460 624 443 1.25 0.096 199 191 1.00 0.000 534 195 0.003148 0.001172 K13 2 2 1686 1.05 0.021 hha b0460 haemolysin expression modulating protein Regulatory function regulator; Proteins - translation and modification b0461 496 1070 -2.14 -0.331 708 970 -1.37 -0.137 783 839 0.004621 0.005052 H6 2 2 2804 -1.09 -0.039 ybaJ b0461 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0462 691 776 -1.12 -0.050 463 518 -1.04 -0.016 734 490 0.004330 0.002952 B11 4 1 1097 1.44 0.159 acrB b0462 acridine efflux pump Cell processes transport; Drug/analog sensitivity b0463 1293 1049 1.23 0.091 1200 1099 1.09 0.038 1171 1149 0.006909 0.006919 O10 1 1 424 -1.00 -0.001 acrA b0463 acridine efflux pump Cell processes transport; Drug/analog sensitivity b0464 1345 1738 -1.29 -0.111 1260 1342 -1.07 -0.028 1542 1301 0.009099 0.007834 D11 4 1 1098 1.16 0.065 acrR b0464 acrAB operon repressor Regulatory function regulator; Drug/analog sensitivity b0465 8611 8593 1.00 0.001 8520 7401 1.15 0.061 8602 7961 0.050757 0.047927 C6 3 1 594 1.06 0.025 aefA b0465 putative alpha helix protein "Hypothetical, unclassified, unknown" orf; Not classified b0466 13526 11838 1.14 0.058 13203 15426 -1.17 -0.068 12682 14314 0.074831 0.086179 J6 2 2 2805 -1.15 -0.061 ybaM b0466 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0467 4049 4875 -1.20 -0.081 3138 3218 -1.03 -0.011 4462 3178 0.026330 0.019133 J18 4 1 1509 1.38 0.139 priC b0467 primosomal replication protein N'' "DNA replication, repair, restriction/modification" "factor; DNA - replication, repair, restriction/modification" b0468 619 612 1.01 0.005 309 172 1.00 0.000 615 241 0.003630 0.001448 C9 4 1 322 1.21 0.083 ybaN b0468 putative gene 58 "Hypothetical, unclassified, unknown" orf; Not classified b0469 1032 887 1.16 0.066 1522 1583 -1.04 -0.017 959 1552 0.005660 0.009345 K18 1 2 1990 -1.65 -0.218 apt b0469 adenine phosphoribosyltransferase Nucleotide biosynthesis and metabolism enzyme; Salvage of nucleosides and nucleotides b0470 1061 1225 -1.16 -0.063 974 1255 -1.29 -0.110 1143 1114 0.006745 0.006710 L18 4 1 1510 1.01 0.002 dnaX b0470 "DNA polymerase III, tau and gamma subunits; DNA elongation factor III" "DNA replication, repair, restriction/modification" "enzyme; DNA - replication, repair, restriction/modification" b0471 3468 3230 1.07 0.031 3241 3443 -1.06 -0.026 3349 3342 0.019761 0.020123 L6 2 2 2806 -1.02 -0.008 ybaB b0471 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0472 2209 2141 1.03 0.014 2046 2324 -1.14 -0.055 2175 2185 0.012835 0.013155 N18 4 1 1511 -1.02 -0.011 recR b0472 recombination and repair "DNA replication, repair, restriction/modification" "putative enzyme; DNA - replication, repair, restriction/modification" b0473 3053 2675 1.14 0.057 2810 2987 -1.06 -0.027 2864 2898 0.016901 0.017449 F11 4 1 1099 -1.03 -0.014 htpG b0473 "chaperone Hsp90, heat shock protein C 62.5" Cell processes factor; Chaperones b0474 4787 4228 1.13 0.054 5185 4472 1.16 0.064 4507 4828 0.026596 0.029070 M18 1 2 1991 -1.09 -0.039 adk b0474 adenylate kinase activity; pleiotropic effects on glycerol-3-phosphate acyltransferase activity Nucleotide biosynthesis and metabolism enzyme; Purine ribonucleotide biosynthesis b0475 1993 1934 1.03 0.013 1791 1664 1.08 0.032 1963 1728 0.011584 0.010401 C22 4 2 2290 1.11 0.047 hemH b0475 ferrochelatase: final enzyme of heme biosynthesis "Biosynthesis of cofactors, prosthetic groups and carriers" "enzyme; Biosynthesis of cofactors, carriers: Heme, porphyrin" b0476 123 463 -1.00 0.000 220 329 -1.00 0.000 293 274 0.001729 0.001652 G8 2 2 2044 1.00 0.000 ybaC b0476 putative lipase (EC 3.1.1.-) "Hypothetical, unclassified, unknown" orf; Not classified b0477 2199 1309 1.68 0.225 3535 1939 1.82 0.261 1754 2737 0.010349 0.016480 O18 1 2 1992 -1.59 -0.202 gsk b0477 inosine-guanosine kinase Nucleotide biosynthesis and metabolism enzyme; Salvage of nucleosides and nucleotides b0478 7215 7845 -1.09 -0.036 6458 6697 -1.04 -0.016 7530 6577 0.044434 0.039599 K20 3 1 654 1.12 0.050 ybaL b0478 putative transport protein Putative transport proteins putative transport; Not classified b0479 754 547 1.38 0.139 324 387 -1.00 0.000 650 356 0.003837 0.002142 H11 4 1 1100 1.28 0.107 fsr b0479 fosmidomycin resistance protein Putative transport proteins putative transport; Not classified b0480 14439 12790 1.13 0.053 11592 13319 -1.15 -0.060 13615 12455 0.080336 0.074989 A2 3 2 2113 1.07 0.030 ushA b0480 UDP-sugar hydrolase (5'-nucleotidase) Central intermediary metabolism "enzyme; Central intermediary metabolism: Sugar-nucleotide biosynthesis, conversions" b0481 1787 1702 1.05 0.021 1803 1560 1.16 0.063 1744 1681 0.010293 0.010123 N6 2 2 2807 1.02 0.007 ybaK b0481 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0482 3424 3157 1.08 0.035 3719 3328 1.12 0.048 3290 3524 0.019415 0.021214 C2 3 2 2114 -1.09 -0.038 ybaP b0482 putative ligase Putative enzymes putative enzyme; Not classified b0483 2898 3244 -1.12 -0.049 1717 1815 -1.06 -0.024 3071 1766 0.018121 0.010633 P6 2 2 2808 1.70 0.232 ybaQ b0483 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0484 1257 1247 1.01 0.004 768 649 1.18 0.073 1252 708 0.007389 0.004265 M20 3 1 655 1.73 0.239 ybaR b0484 putative ATPase Putative enzymes putative enzyme; Not classified b0485 2726 2066 1.32 0.120 298 473 -1.00 0.000 2396 386 0.014136 0.002322 N21 1 2 2391 4.71 0.673 ybaS b0485 putative glutaminase Putative enzymes putative enzyme; Not classified b0486 1199 1442 -1.20 -0.080 438 498 -1.00 0.000 1321 468 0.007792 0.002817 J15 2 1 925 2.60 0.415 ybaT b0486 putative amino acid/amine transport protein Putative transport proteins putative transport; Not classified b0487 2136 2430 -1.14 -0.056 736 820 -1.11 -0.047 2283 778 0.013471 0.004686 J11 4 1 1101 2.87 0.459 ybbI b0487 putative transcriptional regulator Putative transport proteins putative transport; Not classified b0488 102 250 -1.00 0.000 315 256 1.00 0.000 176 285 0.001039 0.001718 B8 2 2 2809 -1.00 0.000 ybbJ b0488 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0489 1681 1553 1.08 0.034 501 499 1.00 0.001 1617 500 0.009542 0.003011 C2 3 1 578 3.17 0.501 ybbK b0489 putative protease Putative enzymes putative enzyme; Not classified b0490 824 1080 -1.31 -0.117 662 974 -1.47 -0.168 952 818 0.005619 0.004926 L15 2 1 926 1.14 0.057 ybbL b0490 putative ATP-binding component of a transport system Putative transport proteins putative transport; Not classified b0491 974 1602 -1.65 -0.216 1313 1412 -1.08 -0.032 1288 1362 0.007598 0.008202 N15 2 1 927 -1.08 -0.033 ybbM b0491 putative metal resistance protein Putative transport proteins putative transport; Drug/analog sensitivity b0492 1128 1133 -1.00 -0.002 857 832 1.03 0.013 1130 844 0.006669 0.005083 J8 2 1 1277 1.31 0.118 ybbN b0492 putative thioredoxin-like protein Putative enzymes putative enzyme; Not classified b0493 2496 1770 1.41 0.149 1278 1326 -1.04 -0.016 2133 1302 0.012586 0.007838 P21 1 2 2392 1.61 0.206 ybbO b0493 putative oxidoreductase Putative enzymes putative enzyme; Not classified b0494 -83 363 -1.00 0.000 254 359 -1.00 0.000 140 307 0.000828 0.001845 I8 2 2 2045 -1.00 0.000 tesA b0494 acyl-CoA thioesterase I; also functions as protease I Fatty acid and phospholipid metabolism enzyme; Fatty acid and phosphatidic acid biosynthesis b0495 7903 6539 1.21 0.082 4139 4430 -1.07 -0.029 7221 4284 0.042607 0.025794 O20 3 1 656 1.65 0.218 ybbA b0495 putative ATP-binding component of a transport system Putative transport proteins putative transport; Not classified b0496 4173 3703 1.13 0.052 8409 8190 1.03 0.011 3938 8300 0.023238 0.049969 B23 1 2 2393 -2.15 -0.333 ybbP b0496 putative oxidoreductase Putative enzymes putative enzyme; Not classified b0497 6085 7023 -1.15 -0.062 6936 6964 -1.00 -0.002 6554 6950 0.038674 0.041844 D8 2 2 2810 -1.08 -0.034 rhsD b0497 rhsD protein in rhs element "Hypothetical, unclassified, unknown" orf; Transposon-related functions b0498 174 156 1.00 0.000 138 93 1.00 0.000 165 116 0.000975 0.000695 F8 2 2 2811 1.00 0.000 ybbC b0498 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0499 222 560 -1.12 -0.049 389 352 1.00 0.000 391 371 0.002305 0.002231 H8 2 2 2812 1.00 0.000 b0499 b0499 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0500 1070 1182 -1.11 -0.044 1035 1108 -1.07 -0.029 1126 1071 0.006644 0.006451 J8 2 2 2813 1.03 0.013 ybbD b0500 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0501 145 296 -1.00 0.000 240 294 -1.00 0.000 220 267 0.001300 0.001607 L8 2 2 2814 -1.00 0.000 b0501 b0501 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0502 2249 1984 1.13 0.054 1874 2438 -1.30 -0.114 2116 2156 0.012488 0.012981 N8 2 2 2815 -1.04 -0.017 b0502 b0502 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0503 2548 2332 1.09 0.038 1589 1359 1.17 0.068 2440 1474 0.014399 0.008873 E6 3 1 595 1.62 0.210 ybbB b0503 putative capsule anchoring protein Cell structure phenotype; Surface polysaccharides & antigens b0504 88 290 -1.00 0.000 25 131 -1.00 0.000 189 78 0.001115 0.000470 M23 2 1 191 1.00 0.000 ybbS b0504 putative transcriptional regulator LYSR-type Putative regulatory proteins putative regulator; Not classified b0505 3188 3255 -1.02 -0.009 1980 1823 1.09 0.036 3221 1901 0.019007 0.011446 P8 2 2 2816 1.66 0.220 ybbT b0505 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0506 956 1209 -1.27 -0.102 768 1005 -1.31 -0.117 1082 886 0.006387 0.005336 O23 2 1 192 1.20 0.078 ybbU b0506 putative regulator Putative regulatory proteins putative regulator; Not classified b0507 3225 1947 1.66 0.219 1954 1780 1.10 0.041 2586 1867 0.015260 0.011241 E2 3 2 2115 1.36 0.133 gcl b0507 glyoxylate carboligase Central intermediary metabolism "enzyme; Central intermediary metabolism: Pool, multipurpose conversions" b0508 1686 1029 1.64 0.215 1134 832 1.36 0.135 1358 983 0.008012 0.005918 G2 3 2 2116 1.35 0.132 gip b0508 glyoxylate-induced protein Central intermediary metabolism phenotype; Not classified b0509 217 218 -1.00 0.000 423 295 1.00 0.000 217 359 0.001282 0.002162 D23 1 2 2394 -1.00 0.000 ybbQ b0509 putative oxidoreductase Putative enzymes putative enzyme; Not classified b0510 294 237 1.00 0.000 226 505 -1.01 -0.005 266 366 0.001568 0.002201 B10 2 2 2817 -1.00 0.000 ybbV b0510 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0511 1637 1545 1.06 0.025 368 985 -1.97 -0.294 1591 676 0.009387 0.004071 P15 2 1 928 2.31 0.363 ybbW b0511 putative transport protein Putative transport proteins putative transport; Not classified b0512 3128 3834 -1.23 -0.088 2457 2285 1.08 0.032 3481 2371 0.020540 0.014276 I2 3 2 2117 1.44 0.158 ybbX b0512 putative hydrolase Putative enzymes putative enzyme; Not classified b0513 1302 2257 -1.73 -0.239 3460 4147 -1.20 -0.079 1779 3804 0.010498 0.022900 B17 2 1 929 -2.18 -0.339 ybbY b0513 putative transport Putative transport proteins putative transport; Not classified b0514 456 519 -1.04 -0.016 325 510 -1.02 -0.008 487 417 0.002875 0.002512 D10 2 2 2818 1.00 0.000 ybbZ b0514 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0515 1119 1632 -1.46 -0.164 1518 2207 -1.45 -0.162 1375 1863 0.008115 0.011215 F10 2 2 2819 -1.38 -0.140 ylbA b0515 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0516 1273 1077 1.18 0.073 1183 1205 -1.02 -0.008 1175 1194 0.006933 0.007191 F23 1 2 2395 -1.04 -0.016 ylbB b0516 putative hydantoin utilization protein Putative enzymes phenotype; Not classified b0517 2674 5059 -1.89 -0.277 3417 3077 1.11 0.046 3866 3247 0.022815 0.019548 K2 3 2 2118 1.17 0.067 ylbC b0517 putative malate dehydrogenase (EC 1.1.1.37) Putative enzymes putative enzyme; Not classified b0518 575 638 -1.11 -0.045 969 865 1.12 0.049 607 917 0.003579 0.005523 H23 1 2 2396 -1.54 -0.188 fdrA b0518 involved in protein transport; multicopy suppressor of dominant negative ftsH mutants Putative transport proteins "transport; Protein, peptide secretion" b0519 1107 1269 -1.15 -0.059 574 529 1.09 0.035 1188 551 0.007009 0.003319 H10 2 2 2820 2.11 0.325 ylbE b0519 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0520 322 316 1.00 0.000 235 306 -1.00 0.000 319 270 0.001883 0.001628 J23 1 2 2397 1.00 0.000 ylbF b0520 putative carboxylase Putative enzymes putative enzyme; Not classified b0521 1765 1529 1.15 0.062 1267 1135 1.12 0.048 1647 1201 0.009717 0.007230 M2 3 2 2119 1.34 0.128 arcC b0521 putative carbamate kinase (EC 2.7.2.2) Putative enzymes putative enzyme; Not classified b0522 2497 2225 1.12 0.050 2565 2534 1.01 0.005 2361 2549 0.013932 0.015348 A20 1 2 1993 -1.10 -0.042 purK b0522 "phosphoribosylaminoimidazole carboxylase = AIR carboxylase, CO(2)-fixing subunit" Nucleotide biosynthesis and metabolism enzyme; Purine ribonucleotide biosynthesis b0523 1272 1147 1.11 0.045 1383 1107 1.25 0.097 1210 1245 0.007138 0.007494 C20 1 2 1994 -1.05 -0.021 purE b0523 "phosphoribosylaminoimidazole carboxylase = AIR carboxylase, catalytic subunit" Nucleotide biosynthesis and metabolism enzyme; Purine ribonucleotide biosynthesis b0524 884 1123 -1.27 -0.104 894 1071 -1.20 -0.078 1003 982 0.005920 0.005914 J10 2 2 2821 1.00 0.000 ybbF b0524 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0525 5814 5296 1.10 0.041 4169 5226 -1.25 -0.098 5555 4697 0.032778 0.028281 M13 2 2 1687 1.16 0.064 ppiB b0525 peptidyl-prolyl cis-trans isomerase B (rotamase B) "Translation, post-translational modification" enzyme; Proteins - translation and modification b0526 5480 5305 1.03 0.014 3824 4000 -1.05 -0.020 5393 3912 0.031820 0.023550 O13 2 2 1688 1.35 0.131 cysS b0526 cysteine tRNA synthetase "Translation, post-translational modification" "enzyme; Aminoacyl tRNA synthetases, tRNA modification" b0527 1963 2039 -1.04 -0.016 1309 1071 1.22 0.087 2001 1190 0.011807 0.007163 L10 2 2 2822 1.65 0.217 ybcI b0527 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0528 1055 1034 1.02 0.009 1313 1409 -1.07 -0.030 1044 1361 0.006163 0.008194 N10 2 2 2823 -1.33 -0.124 ybcJ b0528 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0529 2004 1936 1.04 0.015 2350 2406 -1.02 -0.010 1970 2378 0.011626 0.014315 E22 4 2 2291 -1.23 -0.090 folD b0529 "5,10-methylene-tetrahydrofolate dehydrogenase; 5,10-methylene-tetrahydrofolate cyclohydrolase" "Biosynthesis of cofactors, prosthetic groups and carriers" "enzyme; Biosynthesis of cofactors, carriers: Folic acid" b0530 534 467 1.07 0.029 67 315 -1.00 0.000 501 191 0.002954 0.001150 L11 4 1 1102 1.00 0.000 sfmA b0530 putative fimbrial-like protein Putative cell structure putative structure; Not classified b0531 27 99 -1.00 0.000 8 106 -1.00 0.000 63 57 0.000373 0.000343 N24 1 1 1247 1.00 0.000 sfmC b0531 putative chaperone Putative factors putative factor; Not classified b0532 2444 2555 -1.05 -0.019 1899 1650 1.15 0.061 2499 1775 0.014747 0.010685 A12 1 1 425 1.38 0.140 sfmD b0532 "putative outer membrane protein, export function" putative membrane protein putative membrane; Not classified b0533 950 765 1.24 0.094 374 544 -1.09 -0.037 857 459 0.005059 0.002764 N11 4 1 1103 1.69 0.227 sfmH b0533 involved in fimbrial asembly Cell processes phenotype; Not classified b0534 352 162 1.00 0.000 138 213 -1.00 0.000 257 176 0.001519 0.001059 P11 4 1 1104 1.00 0.000 sfmF b0534 putative fimbrial-like protein Putative cell structure putative structure; Not classified b0535 106 -56 1.00 0.000 172 59 1.00 0.000 25 115 0.000148 0.000694 C12 1 1 426 -1.00 0.000 fimZ b0535 fimbrial Z protein; probable signal transducer Putative regulatory proteins putative regulator; Surface structures b0537 572 846 -1.48 -0.171 259 379 -1.00 0.000 709 319 0.004183 0.001920 E9 4 1 323 1.39 0.144 intD b0537 prophage DLP12 integrase "Phage, transposon, or plasmid" "IS, phage, Tn; Phage-related functions and prophages" b0538 863 732 1.18 0.071 443 465 -1.00 0.000 798 454 0.004706 0.002731 F2 2 3 193 1.57 0.196 b0538 b0538 putative sensory transduction regulator Putative regulatory proteins putative regulator; Not classified b0539 1760 1617 1.09 0.037 375 324 1.00 0.000 1688 349 0.009963 0.002104 G9 4 1 324 3.32 0.521 b0539 b0539 putative exonuclease (EC 3.1.11.3) similar to lambda Putative enzymes putative enzyme; Not classified b0540 1787 2343 -1.31 -0.118 1311 1254 1.05 0.019 2065 1282 0.012187 0.007720 P10 2 2 2824 1.58 0.198 b0540 b0540 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0541 1985 1879 1.06 0.024 567 643 -1.13 -0.055 1932 605 0.011398 0.003640 I9 4 1 325 3.13 0.496 tra5_2 b0541 IS3 putative transposase "Phage, transposon, or plasmid" "IS, phage, Tn; Transposon-related functions" b0542 230 253 -1.00 0.000 102 165 -1.00 0.000 242 133 0.001426 0.000803 B12 2 2 2825 1.00 0.000 b0542 b0542 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0543 629 546 1.15 0.061 194 289 -1.00 0.000 588 241 0.003468 0.001454 D12 2 2 2826 1.16 0.063 emrE b0543 methylviologen resistance Cell processes transport; Drug/analog sensitivity b0544 166 391 -1.00 0.000 391 396 -1.00 0.000 279 394 0.001645 0.002369 F12 2 2 2827 -1.00 0.000 ybcK b0544 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0545 53 168 -1.00 0.000 -77 -56 -1.00 0.000 111 -66 0.000652 -0.000400 H12 2 2 2828 1.00 0.000 ybcL b0545 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0546 -281 554 -1.11 -0.044 -163 429 -1.00 0.000 136 133 0.000804 0.000799 A15 2 2 1689 1.00 0.000 ybcM b0546 putative ARAC-type regulatory protein Putative regulatory proteins putative regulator; Not classified b0547 10628 10653 -1.00 -0.001 16168 13980 1.16 0.063 10640 15074 0.062786 0.090756 J12 2 2 2829 -1.45 -0.160 ybcN b0547 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0548 16751 17260 -1.03 -0.013 17319 16891 1.03 0.011 17006 17105 0.100345 0.102982 L12 2 2 2830 -1.03 -0.011 ninE b0548 similar to phage 82 and lambda proteins "Phage, transposon, or plasmid" "IS, phage, Tn; Phage-related functions and prophages" b0549 19667 17244 1.14 0.057 14391 13874 1.04 0.016 18456 14133 0.108901 0.085087 N12 2 2 2831 1.28 0.107 ybcO b0549 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0550 818 731 1.12 0.049 518 533 -1.03 -0.013 775 525 0.004571 0.003164 P12 2 2 2832 1.44 0.160 rus b0550 endodeoxyribonuclease RUS (Holliday junction resolvase) "DNA replication, repair, restriction/modification" enzyme; Degradation of DNA b0551 57 251 -1.00 0.000 91 253 -1.00 0.000 154 172 0.000911 0.001036 B14 2 2 2833 -1.00 0.000 ybcQ b0551 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0552 4070 3961 1.03 0.012 4373 4464 -1.02 -0.009 4016 4419 0.023695 0.026604 K9 4 1 326 -1.12 -0.050 trs5_2 b0552 IS5 transposase "Phage, transposon, or plasmid" "IS, phage, Tn; Transposon-related functions" b0553 4476 5347 -1.19 -0.077 4366 4339 1.01 0.003 4911 4353 0.028980 0.026207 M9 4 1 327 1.11 0.044 nmpC b0553 outer membrane porin protein; locus of qsr prophage "Phage, transposon, or plasmid" "IS, phage, Tn; Phage-related functions and prophages" b0554 2880 4024 -1.40 -0.145 2173 2341 -1.08 -0.032 3452 2257 0.020371 0.013589 D14 2 2 2834 1.50 0.176 ybcR b0554 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0555 1054 996 1.06 0.025 787 848 -1.08 -0.033 1025 817 0.006048 0.004920 F14 2 2 2835 1.23 0.090 ybcS b0555 bacteriophage lambda lysozyme homolog "Phage, transposon, or plasmid" "IS, phage, Tn; Phage-related functions and prophages" b0556 238 252 -1.00 0.000 417 514 -1.03 -0.012 245 465 0.001445 0.002803 H14 2 2 2836 -1.00 0.000 ybcT b0556 bacteriophage lambda endopeptidase homolog "Phage, transposon, or plasmid" "IS, phage, Tn; Phage-related functions and prophages" b0557 451 582 -1.16 -0.066 1958 2116 -1.08 -0.034 517 2037 0.003049 0.012266 J14 2 2 2837 -4.02 -0.605 ybcU b0557 bacteriophage lambda Bor protein homolog "Phage, transposon, or plasmid" "IS, phage, Tn; Phage-related functions and prophages" b0558 626 511 1.23 0.088 334 200 1.00 0.000 568 267 0.003352 0.001608 E12 1 1 427 1.12 0.048 ybcV b0558 putative an envelop protein Putative cell structure putative structure; Not classified b0559 1671 2075 -1.24 -0.094 1985 2241 -1.13 -0.053 1873 2113 0.011051 0.012721 L14 2 2 2838 -1.15 -0.061 ybcW b0559 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0560 141 173 -1.00 0.000 178 171 1.00 0.000 157 175 0.000927 0.001052 O9 4 1 328 -1.00 0.000 nohB b0560 bacteriophage DNA packaging protein "Phage, transposon, or plasmid" "IS, phage, Tn; Phage-related functions and prophages" b0561 1074 889 1.21 0.082 785 717 1.10 0.040 981 751 0.005791 0.004522 N14 2 2 2839 1.28 0.107 ybcX b0561 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0562 721 963 -1.34 -0.126 741 737 1.01 0.003 842 739 0.004968 0.004451 P14 2 2 2840 1.12 0.048 ybcY b0562 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0563 -17 400 -1.00 0.000 -90 100 -1.00 0.000 191 5 0.001130 0.000030 B16 2 2 2841 1.00 0.000 ylcE b0563 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0564 2190 2593 -1.18 -0.073 1169 1061 1.10 0.042 2391 1115 0.014111 0.006711 O2 3 2 2120 2.10 0.323 appY b0564 regulatory protein affecting appA and other genes Regulatory function "regulator; Central intermediary metabolism: Pool, multipurpose conversions" b0565 23840 18568 1.28 0.109 11586 10995 1.05 0.023 21204 11290 0.125117 0.067975 G12 1 1 428 1.84 0.265 ompT b0565 "outer membrane protein 3b (a), protease VII" Cell structure enzyme; Outer membrane constituents b0566 1688 1363 1.24 0.093 499 441 1.00 0.000 1526 470 0.009003 0.002829 I12 1 1 429 3.00 0.477 envY b0566 envelope protein; thermoregulation of porin biosynthesis Cell processes structural component; Outer membrane constituents b0567 3884 3474 1.12 0.048 2423 2463 -1.02 -0.007 3679 2443 0.021709 0.014709 D16 2 2 2842 1.48 0.169 ybcH b0567 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0568 3697 3505 1.05 0.023 3911 3920 -1.00 -0.001 3601 3915 0.021249 0.023573 A11 4 1 329 -1.11 -0.045 nfrA b0568 "bacteriophage N4 receptor, outer membrane protein" "Phage, transposon, or plasmid" membrane; Phage-related functions and prophages b0569 2497 1706 1.46 0.165 3398 2836 1.20 0.079 2102 3117 0.012402 0.018766 C11 4 1 330 -1.51 -0.180 nfrB b0569 "bacteriophage N4 receptor, outer membrane protein" "Phage, transposon, or plasmid" membrane; Phage-related functions and prophages b0570 861 983 -1.14 -0.058 706 784 -1.11 -0.046 922 745 0.005440 0.004486 C1 3 1 194 1.21 0.084 ybcZ b0570 putative 2-component sensor protein Putative regulatory proteins putative regulator; Not classified b0571 3508 3427 1.02 0.010 2095 2254 -1.08 -0.032 3468 2174 0.020461 0.013090 E1 3 1 195 1.56 0.194 ylcA b0571 putative 2-component transcriptional regulator Putative regulatory proteins putative regulator; Not classified b0572 68 605 -1.21 -0.083 -102 489 -1.00 0.000 337 194 0.001986 0.001166 D17 2 1 930 1.00 0.000 ylcB b0572 putative resistance protein Putative transport proteins putative transport; Drug/analog sensitivity b0573 494 378 1.00 0.000 132 338 -1.00 0.000 436 235 0.002573 0.001414 F16 2 2 2843 1.00 0.000 ylcC b0573 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0574 1498 2051 -1.37 -0.136 1479 1791 -1.21 -0.083 1775 1635 0.010473 0.009844 F17 2 1 931 1.06 0.027 ylcD b0574 putative resistance protein Putative transport proteins putative transport; Drug/analog sensitivity b0575 4278 4610 -1.08 -0.032 4408 4960 -1.13 -0.051 4444 4684 0.026222 0.028199 H17 2 1 932 -1.08 -0.032 ybdE b0575 putative inner membrane component for iron transport Putative transport proteins putative transport; Not classified b0576 419 -157 1.00 0.000 657 339 1.31 0.119 131 498 0.000773 0.003000 A22 3 1 657 -1.00 0.000 pheP b0576 phenylalanine-specific transport system Transport and binding proteins "transport; Transport of small molecules: Amino acids, amines" b0577 4033 5977 -1.48 -0.171 3562 4769 -1.34 -0.127 5005 4165 0.029533 0.025079 J17 2 1 933 1.18 0.071 ybdG b0577 putative transport Putative transport proteins putative transport; Not classified b0578 895 786 1.14 0.056 829 1162 -1.40 -0.147 841 996 0.004961 0.005994 B13 4 1 1105 -1.21 -0.082 nfnB b0578 oxygen-insensitive NAD(P)H nitroreductase Cell processes enzyme; Drug/analog sensitivity b0579 1910 1898 1.01 0.003 1234 1199 1.03 0.013 1904 1216 0.011234 0.007323 H16 2 2 2844 1.53 0.186 ybdF b0579 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0580 535 637 -1.19 -0.076 618 601 1.03 0.012 586 610 0.003460 0.003670 J16 2 2 2845 -1.06 -0.026 ybdJ b0580 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0581 2315 2318 -1.00 -0.001 1308 1416 -1.08 -0.034 2316 1362 0.013668 0.008200 L16 2 2 2846 1.67 0.222 ybdK b0581 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0582 2170 2024 1.07 0.030 2382 2624 -1.10 -0.042 2097 2503 0.012375 0.015070 E11 4 1 331 -1.22 -0.086 yi81_2 b0582 IS186 hypothetical protein "Phage, transposon, or plasmid" "IS, phage, Tn; Transposon-related functions" b0583 1900 1633 1.16 0.066 1279 1284 -1.00 -0.002 1766 1281 0.010423 0.007714 G22 4 2 2292 1.35 0.131 entD b0583 "enterochelin synthetase, component D" "Biosynthesis of cofactors, prosthetic groups and carriers" "enzyme; Biosynthesis of cofactors, carriers: Enterochelin" b0584 8307 8820 -1.06 -0.026 238 326 -1.00 0.000 8564 282 0.050533 0.001701 C22 3 1 658 16.84 1.226 fepA b0584 outer membrane receptor for ferric enterobactin (enterochelin) and colicins B and D Transport and binding proteins membrane; Transport of small molecules: Cations b0585 2826 3219 -1.14 -0.057 1251 1213 1.03 0.013 3023 1232 0.017835 0.007417 E22 3 1 659 2.40 0.381 fes b0585 enterochelin esterase Transport and binding proteins enzyme; Transport of small molecules: Cations b0586 1114 1810 -1.62 -0.211 100 192 -1.00 0.000 1462 146 0.008626 0.000878 I22 4 2 2293 2.88 0.459 entF b0586 ATP-dependent serine activating enzyme (may be part of enterobactin synthase as component F) "Biosynthesis of cofactors, prosthetic groups and carriers" "enzyme; Biosynthesis of cofactors, carriers: Enterochelin" b0587 1454 1397 1.04 0.017 1388 1269 1.09 0.039 1425 1329 0.008411 0.008000 G22 3 1 660 1.05 0.022 fepE b0587 ferric enterobactin (enterochelin) transport Transport and binding proteins transport; Transport of small molecules: Cations b0588 804 869 -1.08 -0.033 428 384 1.00 0.000 836 406 0.004936 0.002446 I22 3 1 661 1.65 0.216 fepC b0588 ATP-binding component of ferric enterobactin transport Transport and binding proteins transport; Transport of small molecules: Cations b0589 608 521 1.17 0.067 202 261 -1.00 0.000 564 231 0.003330 0.001393 K22 3 1 662 1.11 0.045 fepG b0589 ferric enterobactin transport protein Transport and binding proteins transport; Transport of small molecules: Cations b0590 2614 2318 1.13 0.052 1567 1411 1.11 0.046 2466 1489 0.014553 0.008964 M22 3 1 663 1.62 0.210 fepD b0590 ferric enterobactin (enterochelin) transport Transport and binding proteins transport; Transport of small molecules: Cations b0591 2787 2892 -1.04 -0.016 1176 1598 -1.36 -0.133 2839 1387 0.016754 0.008351 L17 2 1 934 2.01 0.302 ybdA b0591 putative transport Putative transport proteins putative transport; Not classified b0592 1008 848 1.19 0.075 380 386 -1.00 0.000 928 383 0.005477 0.002306 O22 3 1 664 1.83 0.261 fepB b0592 ferric enterobactin (enterochelin) binding protein; periplasmic component Transport and binding proteins transport; Transport of small molecules: Cations b0593 3259 4108 -1.26 -0.100 1241 1452 -1.17 -0.068 3683 1346 0.021735 0.008105 K22 4 2 2294 2.68 0.428 entC b0593 "isochorismate hydroxymutase 2, enterochelin biosynthesis" "Biosynthesis of cofactors, prosthetic groups and carriers" "enzyme; Biosynthesis of cofactors, carriers: Enterochelin" b0594 3915 3426 1.14 0.058 1033 1026 1.01 0.003 3670 1030 0.021658 0.006198 M22 4 2 2295 3.49 0.543 entE b0594 "2,3-dihydroxybenzoate-AMP ligase" "Biosynthesis of cofactors, prosthetic groups and carriers" "enzyme; Biosynthesis of cofactors, carriers: Enterochelin" b0595 3239 3639 -1.12 -0.051 1215 1171 1.04 0.016 3439 1193 0.020292 0.007184 O22 4 2 2296 2.82 0.451 entB b0595 "2,3-dihydro-2,3-dihydroxybenzoate synthetase, isochroismatase" "Biosynthesis of cofactors, prosthetic groups and carriers" "enzyme; Biosynthesis of cofactors, carriers: Enterochelin" b0596 9584 9309 1.03 0.013 7696 7600 1.01 0.005 9447 7648 0.055742 0.046044 P6 2 3 2297 1.21 0.083 entA b0596 "2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase, enterochelin biosynthesis" "Biosynthesis of cofactors, prosthetic groups and carriers" "enzyme; Biosynthesis of cofactors, carriers: Enterochelin" b0597 3753 5120 -1.36 -0.135 1737 2225 -1.28 -0.107 4437 1981 0.026179 0.011927 N16 2 2 2847 2.19 0.341 ybdB b0597 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0598 17066 16561 1.03 0.013 10763 12636 -1.17 -0.070 16814 11699 0.099212 0.070436 P16 2 2 2848 1.41 0.149 cstA b0598 carbon starvation protein Cell processes phenotype; Global regulatory functions b0599 2084 1908 1.09 0.038 1654 1655 -1.00 0.000 1996 1655 0.011778 0.009962 A4 3 2 2121 1.18 0.073 ybdH b0599 putative oxidoreductase Putative enzymes putative enzyme; Not classified b0600 1668 1811 -1.09 -0.036 1621 1426 1.14 0.056 1739 1524 0.010264 0.009173 C4 3 2 2122 1.12 0.049 ybdL b0600 putative aminotransferase Putative enzymes putative enzyme; Not classified b0601 3604 5145 -1.43 -0.155 8973 8923 1.01 0.002 4375 8948 0.025813 0.053874 B18 2 2 2849 -2.09 -0.320 ybdM b0601 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0602 685 815 -1.19 -0.076 1039 1375 -1.32 -0.122 750 1207 0.004425 0.007264 D18 2 2 2850 -1.64 -0.215 ybdN b0602 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0603 80 -153 1.00 0.000 23 13 1.00 0.000 -37 18 -0.000216 0.000111 G1 3 1 196 -1.00 0.000 ybdO b0603 putative transcriptional regulator LYSR-type Putative regulatory proteins putative regulator; Not classified b0604 385 453 -1.00 0.000 303 371 -1.00 0.000 419 337 0.002472 0.002031 L8 2 1 1278 1.00 0.000 dsbG b0604 thiol:disulfide interchange protein Central intermediary metabolism "enzyme; Central intermediary metabolism: Pool, multipurpose conversions" b0605 12564 12114 1.04 0.016 8192 7942 1.03 0.013 12339 8067 0.072810 0.048568 D13 4 1 1106 1.50 0.176 ahpC b0605 "alkyl hydroperoxide reductase, C22 subunit; detoxification of hydroperoxides" Cell processes enzyme; Detoxification b0606 1786 1736 1.03 0.012 2067 2132 -1.03 -0.013 1761 2099 0.010393 0.012638 F13 4 1 1107 -1.22 -0.085 ahpF b0606 "alkyl hydroperoxide reductase, F52a subunit; detoxification of hydroperoxides" Cell processes enzyme; Detoxification b0607 2205 2100 1.05 0.021 2906 2841 1.02 0.010 2153 2874 0.012701 0.017302 F18 2 2 2851 -1.36 -0.134 ybdQ b0607 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0608 21368 27903 -1.31 -0.116 14085 14105 -1.00 -0.001 24636 14095 0.145368 0.084859 E4 3 2 2123 1.71 0.234 ybdR b0608 putative oxidoreductase Putative enzymes putative enzyme; Not classified b0609 290 256 1.00 0.000 306 366 -1.00 0.000 273 336 0.001611 0.002023 H18 2 2 2852 -1.00 0.000 b0609 b0609 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0610 2174 1274 1.71 0.232 2831 2384 1.19 0.075 1724 2608 0.010174 0.015700 G4 3 2 2124 -1.54 -0.188 rnk b0610 regulator of nucleoside diphosphate kinase Regulatory function regulator; Central intermediary metabolism: Nucleotide interconversions b0611 511 547 -1.07 -0.030 244 268 -1.00 0.000 529 256 0.003121 0.001540 P18 4 1 1512 1.04 0.017 rna b0611 "RNase I, cleaves phosphodiester bond between any two nucleotides" "Transcription, RNA processing and degradation" enzyme; Degradation of RNA b0612 945 1042 -1.10 -0.042 365 474 -1.00 0.000 994 419 0.005864 0.002524 K12 1 1 430 1.95 0.291 ybdS b0612 putative a membrane protein putative membrane protein putative membrane; Not classified b0613 582 684 -1.17 -0.070 663 846 -1.28 -0.106 633 755 0.003733 0.004544 J18 2 2 2853 -1.22 -0.085 citG b0613 "orf, hypothetical protein" "Hypothetical, unclassified, unknown" orf; Unknown b0614 649 1072 -1.65 -0.218 696 1028 -1.48 -0.169 861 862 0.005078 0.005188 L18 2 2 2854 -1.02 -0.009 ybdU b0614 "orf, hypothetical protein" "Hypotheti